
Graduate Research School Available Projects Developing a web tool for animal sequencing data analysis
Developing a web tool for animal sequencing data analysis
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Title of Project
Developing a web tool for animal sequencing data analysis
Advisor/s
A/Prof Ulf Schmitz
College or Research Centre
College of Science & Engineering
Summary of Project
Due to the dramatic reduction in cost for next-generation sequencing, RNA sequencing (RNA-seq) has become a routine research tool and hence large amounts of RNA-seq data have been deposited in public repositories such as NCBI’s – Sequencing Read Archive (SRA). Although these freely available data have vast potential for addressing questions that would not be possible in individual studies most of these data remained untapped mainly due to a lack of computer infrastructure and computer programming skills needed to analyse thousands of gene expression data.
To overcome this, we will build a web-based platform that not only stores thousands of uniformly processed gene expression data but also allows the execution of standard bioinformatics analyses, such as clustering, correlation and co-expression analysis, dimensionality reduction, etc.) and the generation of publication-ready graphs with just a few clicks.
Key Words
bioinformatics; R Shiny; RNA sequencing; web resources
Would suit an applicant who
is interested in bioinformatics, software development, transcriptomics data analysis. Some bioinformatics skills (incl. R programming) would be very helpful.
Updated: 04 Aug 2022