Research Publications

Orpheus Island Research Station Research Publications

The publications listed in the following sections are based in whole or part on work carried out at Orpheus Island Research Station. 

Publications are arranged by author within the year of publication. 

If you have published or are aware of work based on research conducted at Orpheus Island Research Station, please contact us with the relevant reference or publication details and we will include that information below.

2012

Bainbridge, Z.T., Wolanski, E., Alvarez-Romero, J.G., Lewis, S.E., Brodie, J.E. (2012). Fine sediment and nutrient dynamics related to particle size and floc formation in a Burdekin River flood plume, Australia. Marine pollution bulletin, ISSN 0025-326X, 2012, Volume 65, Issue 4-9, pp. 236 - 248

Barnes, L., Bellwood, D.R., Sheaves, M., Tanner, J.K. (2012). The use of clear-water non-estuarine mangroves by reef fishes on the Great Barrier Reef. Marine Biology, 159 (1). pp. 211-220. ISSN 1432-1793

Boaden, A.E., Kingsford, M.J. (2012). Diel behavior and trophic ecology of Scolopsis bilineatus (Nemipteridae). Coral Reefs, 31 (3), pp. 871 - 883

Charpy, L., Casareto, B.E., Langlade, M.J., Suzuki, Y. (2012). Cyanobacteria in Coral Reef Ecosystems: A Review. Journal of Marine Biology, ISSN 1687-9481, 2012, Volume 2012

Freckelton, M.L., Luter, H.M., Andreakis, N., Webster, N.S., Motti, C.A. (2012).Qualitative variation in colour morphotypes of Ianthella basta (Porifera: Verongida) HYDROBIOLOGIA. 687; 1; p191-p203

Gagan, M.K., Dunbar, G.B., Suzuki, A. (2012). The effect of skeletal mass accumulation in Porites on coral Sr/Ca and ?18O paleothermometry. Paleoceanography, ISSN 0883-8305, 2012, Volume 27, Issue 12

Glas, M.S., Sato, Y., Ulstrup, K.E., Bourne, D.G. (2012). Biogeochemical conditions determine virulence of black band disease in corals. The ISME journal, ISSN 1751-7362, 08/2012, Volume 6, Issue 8, pp. 1526 - 1534

Kennedy, K., Devlin, M., Bentley, C., Paxman, C., Chue, K.L., Mueller, J. (2012).Pesticide monitoring in inshore waters of the Great Barrier Reef using both time-integrated and event monitoring techniques (2010 - 2011). The University of Queensland, The National Research Centre for Environmental Toxicology (Entox).

Kennedy, K. et al. (2012). Long term monitoring of photosystem II herbicides--correlation with remotely sensed freshwater extent to monitor changes in the quality of water entering the Great Barrier Reef, Australia. Marine pollution bulletin, ISSN 0025-326X, 2012, Volume 65, Issue 4-9, pp. 292 - 305

Kramer, M., Bellwood, D., Bellwood, O. (2012). Cryptofauna of the epilithic algal matrix on an inshore coral reef, Great Barrier Reef. Coral Reefs. 31 (4), pp. 1007-1015.

Lema, K.A., Willis, B.L., Bourns, D.G. (2012) Corals Form Characteristic Associations with Symbiotic Nitrogen-Fixing Bacteria. Applied and Environmental Microbiology 78 (9)

Leuzinger, S., Willis, B., Anthony, K. (2012). Energy allocation in a reef coral under varying resource availability. Marine Biology. Vol. 159 Issue 1, p177-186. 10p. DOI: 10.1007/s00227-011-1797-1.

Lewis, S.E. et al. (2012). Assessing the additive risks of PSII herbicide exposure to the Great Barrier Reef. Marine pollution bulletin, ISSN 0025-326X, 2012, Volume 65, Issue 4-9, pp. 280 - 291

Lewis, S.E. et al. (2012). Development of an inshore fringing coral reef using textural, compositional and stratigraphic data from Magnetic Island, Great Barrier Reef, Australia. Marine Geology, ISSN 0025-3227, 03/2012, Volume 299-302, pp. 18 - 32

Mian, W., Bo, G., Feifei, S., Yin, T., Ling, Y., Yi, F., Klein, O.D., Xuedong, Z., Liwei, Z. (2012). Molecular Evidence Shows Low Species Diversity of Coral-Associated Hydroids in Acropora Corals. PLoS ONE.Nov2012, Vol. 7 Issue 11, Special section p1-4. 8p.

Milone, M., Southgate, P.C. (2012). Reproductive cycle of the winged pearl oyster, Pteria penguin (Röding 1793) (Pteriidae) in north-eastern Australia. Invertebrate Reproduction & Development, 56 (2), pp. 164-171

Schönberg, C.H.L., Wisshak, M., Form, A., Freiwald, A., Holmes, K.E. (2012).Changes in sponge bioerosion and how to include such changes into monitoring programs. 12th International Coral Reef Symposium, Cairns, Australia 9.-13.7.2012

Schonberg, C.H.L., Wisshak, M. (2012). The perks of being endolithic. AQUATIC BIOLOGY, ISSN 1864-7790, 2012, Volume 17, Issue 1, pp. 1 – 5

Wahab, M.A.A., de Nys, R., Whalan, S. (2012). Closing the lifecycle for the sustainable aquaculture of the bath sponge Coscinoderma matthewsi. AQUACULTURE, ISSN 0044-8486, 01/2012, Volume 324, pp. 281 - 289

van de Water, J.A.J.M., van Oppen, M.J.H., Willis, B.L. (2012). Absence of skeleton deposition in juveniles of the scleractinian coral Acopora millipora. Coral Reefs DOI 10.1007/s00338-012-0935-7

Welsh, J.Q., Bellwood, D.R. (2012). How far do schools of roving herbivores rove? A case study using Scarus rivulatus. CORAL REEFS. 31; 4; p991-p1003

Welsh, J.Q., Fox, R.J., Webber, D.M., Bellwood, D.R. (2012). Performance of remote acoustic receivers within a coral reef habitat: implications for array design. CORAL REEFS. 31; 3; p693-p702

Welsh, J., Bellwood, D. (2012). Spatial ecology of the steephead parrotfish ( Chlorurus microrhinos): an evaluation using acoustic telemetry. Coral Reefs. Vol. 31 Issue 1, p55-65. 11p. 1 Color Photograph, 1 Diagram, 2 Charts, 2 Graphs. DOI: 10.1007/s00338-011-0813-8.

Wisshak, M., Schönberg, C.H.L., Form, A., Freiwald, A. (2012). Effects of ocean acidification versus global warming on reef bioerosion – lessons from a clionaid sponge. 29th Meeting of the International Association of Sedimentiologists, Schladmig, Austria 10.-13.9.2012.

2011

Aeby, G.S., Williams, G.J., Franklin, E.C., Haapkyla, J., Harvell, C.D., Neale, S., Page, C.A., Raymundo, L., Vargas-Angel, B., Willis, B.L., Work, T.M., Davy, S.K. (2011). Growth anomalies on the coral genera Acropora and Porites are strongly associated with host density and human population size across the Indo-Pacific. PLoS ONE 6 (2):e16887: 1-9

Bannister, R.J., Hoogenboom, M.O., Anthoyn, K.R.N., Battershill, C.N., Whalan, S., Webstre, N.S., et al. (2011). Incongruence between the distribution of a common coral reef sponge and photosynthesis. Marine Ecology Progress Series, 423, 95-100.

Bellwood, D.R., Choat, J.H. (2011). Dangerous demographics: the lack of juvenile humphead parrotfishes Bolbometopon muricatum on the Great Barrier Reef. Coral Reefs, ISSN 0722-4028, 06/2011, Volume 30, Issue 2, pp. 549 - 554

Bourne, D.G., Muirhead, A., Sato, Y. (2011) Changes in sulfate reducing bacterial populations during the onset of black band disease. The ISME Journal 5: 559-564.

Bainbridge, S., Eggeling, D., Page, G. (2011). Lessons from the field--two years of deploying operational wireless sensor networks on the Great Barrier Reef. Sensors (Basel, Switzerland), ISSN 1424-8220, 2011, Volume 11, Issue 7, pp. 6842 – 6855

Clark, N.J., Russ, G.R. (2011). Ontogenetic shifts in the habitat associations of butterflyfishes (F. Chaetodontidae. Environmental Biology of Fishes. DOI 10.1007/s10641-011-9964-2

Huang, D., Licuanan, W.Y., Baird, A.H., Fukami, H. (2011). Cleaning up the 'Bigmessidae': molecular phylogeny of scleractinian corals from Faviidae, Merulinidae, Pectiniidae and Trachyphylliidae. BMC evolutionary biology, ISSN 1471-2148, 2011, Volume 11, Issue 1, p. 37

Lefèvre, C.D., Bellwood, D.R. (2011). Temporal variation in coral reef ecosystem processes: herbivory of macroalgae by fishes. Marine Ecology Progress Series 422:239-251

Leuzinger, S., Willis, B.L., Anthony, K.R. (2011). Energy allocation in a reef coral under varying resource availability. Marine Biology DOI 10.1007/s00227-011-1797-1, 10 pp

Milione, M., Southgate, P. (2011). Seasonal changes in recruitment of Pteria penguin in North Queensland, Australia. Marine & Freshwater Biology, 30 (1), pp. 89-94.

Milione, M., Saucedo, P., Southgate, P. (2011). Sexual development, sex ratio and morphometrics of Pteria penguin (Bivalvia: Pteriidae), in north-eastern Australia. MOLLUSCAN RESEARCH. 31; 1; p30-p36

Milione, M. and Co-Researchers. (2011). Shellfish Research; Studies in the Area of Shellfish Research Reported. Ecology, Environment & Conservation, 05/27/2011, p. 914. anonymous.

Negri, A.P., Harford, A.J., Parry, D.L., van Dam, R.A. (2011). Effects of alumina refinery wastewater and signature metal constituents at the upper thermal tolerance of: 2. The early life stages of the coral Acropora tenuis. Marine Pollution Bulletin, ISSN 0025-326X, 2011, Volume 62, Issue 3, pp. 474 - 482

Palmer, C.V., Traylor-Knowles, N.G., Willis, B.L., Bythell, J.C. (2011). Corals use similar immune cells and wound-healing processes to higher organisms PLoS ONE 6 (8) e23992, 1-11

Palmer, C.V., Bythell, J., Willis, B.L. (2011). A comparative study of immune responses in diseased and bleached colonies of the coral Acropora millepora. Developmental and Comparative Immunology DOI: 10.1016/j.dci.2011.04.001

Palmer, C.V., Bythell, J.C., Willis, B.L. (2011). A comparative study of phenoloxidase activity in diseased and bleached colonies of the coral Acropora millepora. Developmental and Comparative Immunology, ISSN 0145-305X, 2011, Volume 35, Issue10, pp. 1098 - 1101

Puill-Stephan E., van Oppen, M.J.H., Pichavant-Rafini, K., Willis, B.L. (2011). High potential for formation and persistence of chimeras following aggregated larval settlement in the broadcast spawning coral, Acrpora millepora. Proc. R. Society B doi:10.108/rspb.2011.1035

Sato, Y., Bourne, D.G., Willis, B.L. (2011). Effects of temperature and light on the progression of black band disease of the reef coral, Montipora hispida. Coral Reefs 30: 753-761

Schönberg, C.H.L., Holmes, K.E. (2011) How to include bioeroding sponges into monitoring programs. 7th International Bioerosion Workshop, Horta, Portugal 18.-20.9.2011.

Schönberg, C.H.L., Wisshak, M, (2011) The perks of being endolithic. 7th International Bioerosion Workshop, Horta, Portugal 18.-20.9.2011.

Schönberg, C.H.L., Burgess, H. (2011) Storm damage after cyclone Yasi: bioeroding sponges survived. 7th International Bioerosion Workshop, Horta, Portugal 18.-20.9.2011.

Schonberg, C.H.L., Abdul Whab, M.A., de Nys, R., Whalan, S. (2011). Larval behaviour and settlement cues of a brooding coral reef sponge. Coral Reefs, 30, 451-460.

Schaffelke B, Carleton J, Doyle J, Furnas M, Gunn K, Skuza M, Wright M, Zagorskis I (2011) Reef Rescue Marine Monitoring Program. Final Report of AIMS Activities 2010/11 – Inshore Water Quality Monitoring. Report for the Great Barrier Reef Marine Park Authority.Australian Institute of Marine Science, Townsville. (83 p.)

Abdul Wahab, M.A., et al., (2011). Closing the lifecycle for the sustainable aquaculture of the bath sponge Coscinoderma matthewsi. Aquaculture, doi:10.1016/j.aquaculture.2011.11.006

Welsh, J. Q., Bellwood, D. (2011). Spatial ecology of the steephead parrotfish (Chlorurus microrhinos): an evaluation using acoustic telemetry. Coral Reefs:1-11

Wisshak, M., Schönberg, C.H.L., Form, A., Freiwald, A. (2011) Global change and bioerosion – preliminary results. 7th International Bioerosion Workshop, Horta, Portugal 18.-20.9.2011

2010

Bellwood, D.R., Klanten, S., Cowman, P.F., Pratchett, M.S., Konow, N., Van Herwerden, L. (2010). Evolutionary history of the butterflyfishes (f: Chaetodontidae) and the rise of coral feeding fishes. Journal of Evolutionary Biology, 23 (2). pp. 335-349.

Bourne, D. G, Muirhead, A., Sato, Y. (2010). Changes in sulfate-reducing bacterial populations during the onset of black band disease. ISME Journal: multidisciplinary journal of microbial ecology (In Press).

Bonaldo, R.M., (2010). The ecosystem role of parrotfishes on coral reefs. Unpublished doctoral dissertation, James Cook University, Townsville.

Brooker, R.M., Munday, P.L., Ainsworth, T.D. (2010). Diets of coral-dwelling fishes of the genus Gobiodon with evidence of corallivory. Journal of Fish Biology, 76 (10). pp. 2578-2583.

Connolly, S.R., Baird, A.H. (2010). Estimating dispersal potential for marine larvae: dynamic models applied to scleractinian corals. Ecology, 91 (12). pp. 3572-3583.

Cvitanovic, C., Hoey, A.S. (2010). Benthic community composition influences within-habitat variation in macroalgal browsing on the Great Barrier Reef. Marine and Freshwater Research, 61 (9). pp. 999-1005.

Donelson, J.M., Munday, P., Mccormick, M.I., Nilsson, G.E. (2010). Acclimation to predicted ocean warming through developmental plasticity in a tropical reef fish. Global Change Biology(in Press).

Evans, R.D., Van Herwerden, L., Russ, G.R., Frisch, A.J. (2010). Strong genetic but not spatial subdivision of two reef fish species targeted by fishers on the Great Barrier Reef. Fisheries Research, 102 (1-2). pp. 16-25.

Glas, M., Motti, C.A., Negri, A., Sato, Y., Froscio, S., Humpage, A.R., Krock, B., Cembella, A., Bourne, D.G. (2010). Cyanotoxins play no role in the etiology of coral black band disease outbreaks on Pelorus Island, Great Barrier Reef. FEMS Microbiology Ecology 73: 43-54.

Heron, S.F., Willis, B.L., Skirving, W.J., Eakin, C.M., Page, C.A., Miller, I.R. (2010).Summer hot snaps and winter conditions: Modelling white syndrome outbreaks on Great Barrier Reef corals. PLoS ONE 5 (8): e12210: 1-11

Hoey, A.S., Bellwood, D.R. (2010). Cross-shelf variation in browsing intensity on the Great Barrier Reef. Coral Reefs, 29 (2). pp. 499-508.

Hoey, A.S. (2010). Size matters: macroalgal height influences the feeding response of coral reef herbivores. Marine Ecology Progress Series, 41 . pp. 299-302.

Hoey, A.S. (2010). The ecosystem role of macroalgal browsing fishes on coral reefs. Unpublished doctoral dissertation, James Cook University, Townsville.

Jones, D.B., Jerry, D.R., McCormick, M.I., Bay, L.K. (2010). The population genetic structure of a common tropical damselfish on the Great Barrier Reef and eastern Papua New Guinea. Coral Reefs, 29 (2). pp. 455-467.

Lefevre, C., Bellwood, D. (2010). Seasonality and dynamics in coral reef macroalgae: variation in condition and susceptibility to herbivory. Marine Biology, 157 (5). pp. 955-965.

Littman, R.A., Bourne, D.G., Willis, B.L. (2010). Responses of coral-associated bacterial communities to heat stress differ with Symbiodinium type on the same coral host. Molecular Ecology, 19 (9). pp. 1978-1990.

Maynard, J.A., Anthony, K.R.N., Harvell, C.D., Burgman, M.A., Beeden, R., Heron, S.F., Lamb, J.B., Willis, B.L. (2010). Predicting outbreaks of a climate-driven coral disease in the Great Barrier Reef. Coral Reefs DOI 10.1007/s00338-010-0708-0

McCormick, M.I., Ryen, C. A., Munday, P.L., Walker, S.P.W. (2010). Differing mechanisms underlie sexual size-dimorphism in two populations of a sex-changing fish. PLoS ONE, 5 (5). 1-8.

Palmer, C.V., Bythell, J.C., Willis, B.L. (2010). Levels of immunity parameters underpin bleaching and disease susceptibility of reef corals. FASEB J fj.09-152447: 1-12

Sato, Y., Willis, B.L., Bourne, D.G. (2010). Successional changes in bacterial communities during the development of black band disease on the reef coral, Montipora hispida. ISME Journal, 4 (2). pp. 203-214.

Schaffelke B, Carleton J, Doyle J, Furnas M, Gunn K, Skuza M, Wright M, Zagorskis I (2010) Reef Rescue Marine Monitoring Program. Final Report of AIMS Activities – Inshore water quality monitoring 2009/10. Report for Reef and Rainforest Research Centre. Australian Institute of Marine Science, Townsville. (81 p.)

Schönberg, C.H.L. (2010). Bioerosion matters – coral reef carbonate cycling from

the sponge point of view. European Coral Reef Conference, Wageningen, The Netherlands, 12.-17.12.2010.

Souter, P., Willis, B.L., Bay, L.K., Caley, M.J., Muirhead, A., van Oppen, M.J.H. (2010). Geographic location and disturbance affect population genetic structure in four species of Acropora coral on the Great Barrier Reef. Marine Ecology Progress Series 416:35-45

Souter, P., Willis, B.L., Bay, L.K., Caley, M.J., Muirhead, A., van Oppen, M.J.H. (2010). Location and disturbance affect population genetic structure in four coral species of the genus Acropora on the Great Barrier Reef. MARINE ECOLOGY-PROGRESS SERIES, ISSN 0171-8630, 2010, Volume 416, pp. 35 - 45

2009

Abrego, D., van Oppen, Madeleine J.H., Willis, B.L. (2009). Highly infectious symbiont dominates initial uptake in coral juveniles. Molecular Ecology, 18. pp. 3518-3531.

Abrego, D., van Oppen, M.J.H., Willis, B.L. (2009). Onset of algal endosymbiont specificity varies among closely related species of Acropora corals during early ontogeny. Molecular Ecology 18:3532-3543

Baird, A.H., Guest, J.R., Willis, B.L. (2009). Systematic and biogeographical patterns in the reproductive biology of scleractinian corals. Annu. Rev. Ecol. Evol. Syst. 40:551-571

Bay, L.K., Nielsen, H.B., Jarmer, H., Seneca, F., van Oppen, M.J.H. (2009).Transcriptomic variation in a coral reveals pathways of clonal organisation. Marine genomics, ISSN 1874-7787, 06/2009, Volume 2, Issue 2, pp. 119 - 125

Bonaldo, R.M., Bellwood, D.R. (2009). Dynamics of parrotfish grazing scars. Marine Biology, 156 (4). pp. 771-777.

Cantin, N.E., van Oppen, M.J.H., Willis, B.L., Mieog, J.C., Negri, A.P. (2009). Juvenile corals can acquire more carbon from high performance algal endosymbionts. Coral Reefs: 28:405-414

Coleman, CO. (2009). Liljeborgiidae. ZOOTAXA, ISSN 1175-5326. Issue 2260, pp. 556 - 560.

Cvitanovic, C., Bellwood, D.R. (2009). Local variation in herbivore feeding activity on an inshore reef of the Great Barrier Reef. Coral Reefs, 28 (1). pp. 127-133.

Davidson, J., Collins, M., Behrens, S. (2009). Thermal energy harvesting between the air/water interface for powering wireless sensor nodes. Proceedings of SPIE, 7288 .

De Freitas, et al (2009). Linking science and management in the adoption of sensor network technology in the Great Barrier Reef coast, Australia. Computers, Environment and Urban Systems, 33 (2). pp. 111-121.

Goatley, C., Bellwood, D.R. (2009). Morphological structure in a reef fish assemblage. Coral Reefs, 28 (2). pp. 1-9.

Hernaman, V., Probert, P.K., Robbins, W.D. (2009). Trophic ecology of coral reef gobies: interspecific, ontogenetic, and seasonal comparison of diet and feeding intensity. Marine Biology, 156 (3). pp. 317-330.

Howell, E.J., van Oppen, M.J.H., Willis, B.L. (2009). High genetic differentiation and cross-shelf patterns of genetic diversity among Great Barrier Reef populations of the dinoflagellate, Symbiodinium. Coral Reefs 28:215-225

Hughes, L.E. (2009). "Paracalliopiidae". Zootaxa (1175-5326), (2260), p. 759

Jones, G.P., Almany, G.R., Russ, G.R., Sale, P.F., Steneck, R.R., van Oppen, M.J.H., Willis, B.L. (2009). Larval retention and connectivity among populations of corals and reef fishes: history, advances and challenges. Coral Reefs 28:307-325

Littman, R.A., Willis, B.L., Pfeffer, C., Bourne, D.G. (2009). Diversities of coral associated bacteria differ with location, but not species, for three acroporid corals on the Great Barrier Reef. FEMS Microbiology Ecology, 68 (2). pp. 152-163.

Littman, R.A., Willis, B.L., Bourne, D.G. (2009). Bacterial communities of juvenile corals infected with different Symbiodinium (dinoflagellate) clades. Mar. Ecol. Prog. Ser. 389:45-59

Mamangkey, N., Gustaf, F., Southgate, P.C. (2009). Regeneration of excised mantle tissue by the silver-lip pearl oyster, Pinctada maxima (Jameson). Fish and Shellfish Immunology, 27 (2). pp. 164-174.

Mamangkey, N., Gustav, F., Acosta-Salmon, H., Southgate, P.C. (2009). Use of anaesthetics with the silver-lip pearl oyster, Pinctada maxima (Jameson). Aquaculture, 288 (3-4). pp. 280-284.

Meyer, E., Aglyamova, G.V., Wang, S., Buchanan-Carter, J., Abrego, D., Colbourne, J.K., Willis, B.L., Matz, M.V. (2009). Sequencing and de novo analysis of the coral larval transcriptome using 454 GS Flx. BMC Genomics 10:219, 18 pp

Meyer, E., Davies, S., Wang, S., Willis, B.L., Abrego, D., Juenger, T.E., Matz, M.V. (2009). Genetic variation in responses to settlement cue and elevated temperature in the reef-building coral, Acropora millepora. Mar. Ecol. Prog. Ser. 392:81-92

Palmer, C.V., Modi, C.K., Mydlarz, L.D. (2009). Coral fluorescent proteins as antioxidants. PLoS ONE, 4 (10). p. 7298.

Puill-Stephan, E., Willis, B.L., van Herwerden, L., van Oppen, M.J.H. (2009).Chimerism in wild adult populations of the broadcast spawning coral Acropora millepora on the Great Barrier Reef. PLoS One 4 (11) e7751: 1-8

Sato, Y., Bourne, D. G., Willis, B. L. (2009). Dynamics of seasonal outbreaks of black band disease in an assemblage of Montipora species at Pelorus Island (Great Barrier Reef, Australia). Proceedings of the Royal Society of London Series B, 276 . pp. 2795-2803.

Sato, Y., Willis, B.L., Bourne, D.G. (2009). Successional changes in bacterial communities during the development of black band disease on the reef coral, Montipora hispida. The ISME Journal 4:203-214

Schaffelke B, Thompson A, Carleton J, Davidson J, Doyle J, Furnas M, Gunn K, Skuza M, Wright M, Zagorskis I (2009) Reef Rescue Marine Monitoring Program. Final Report of AIMS Activities 2008/09. Report for Reef and Rainforest Research Centre.Australian Instit ute of Marine Science, Townsville. (146 p.).

Wismer, et al. (2009). Cross-shelf benthic community structure on the Great Barrier Reef: relationships between macroalgal cover and herbivore biomass. Marine Ecology Progress Series, 376 . pp. 45-54.

Wang, S., Zhang, L.L., Meyer, E., Matz, M.V. (2009). Construction of a high-resolution genetic linkage map and comparative genome analysis for the reef-building coral Acropora millepora. GENOME BIOLOGY; 2009; 10; 11

2008

Abrego, D. (2008). Temporal and environmental influences on the early establishment and maintenance of coral-symbiodinium symbioses. Unpublished doctoral dissertation, James Cook University, Townsville.

Abrego, D., Ulstrup, K. E., Willis, B.L., van Oppen, M.J.H. (2008). Species-specific interactions between algal endosymbionts and coral hosts define their bleaching response to heat and light stress. Proceedings of the Royal Society of London Series B, Biological Sciences, 275 (1648). pp. 2273-2282.

Bay, L.K., Caley, M.J., Crozier, R.H. (2008). Meta-population structure in a coral reef fish demonstrated by genetic data on patterns of migration, extinction and re-colonisation. BMC Evolutionary Biology, 8 .

Birrell, C.L., McCook, L.J., Willis, B.L, Harrington, L. (2008). Chemical effects of macroalgae on larval settlement of the broadcast spawning coral, Acropora millepora. Marine Ecology Progress Series 362:129-137

Birrell, C.L., McCook, L.J., Willis, B.L., Diaz-ulido, G.A. (2008). Effects of benthic algae on the replenishment of corals and the implications for the resilience of coral reefs. Oceanogr Mar Biol Ann Rev 46:25-64

Bonaldo, R. M., Bellwood, D. R. (2008). Size-dependent variation in the functional role of the parrotfish Scarus rivulatus on the Great Barrier Reef, Australia. Marine Ecology Progress Series, 360 . pp. 237-244.

Drachen, T. M. (2008). Growth patterns along environmental gradients of tropical pomacentrid fishes. Unpublished doctoral dissertation, University of Sydney, Sydney.

Ettinger-Epstein, P., Whalan, S., Battershill, C.N., de Nys, R. (2008). A hierarchy of settlement cues influences larval behavior in a coral reef sponge. Marine Ecology Progress Series, 365, 103 – 113. (pdf)

Evans, R.D. (2008). Assessment of an underwater biopsy probe for collecting teleost fish tissue samples. Marine Ecology Progress Series, 368 . pp. 305-308.

Evans, R.D., Russ, G.R., Kritzer, J.P. (2008). Batch fecundity of Lutjanus carponotatus (Lutjanidae) and implications of no-take marine reserves on the Great Barrier Reef, Australia. Coral Reefs, 27 (1). pp. 179-189.

Fox, R.J., Bellwood, D.R. (2008). Remote video bioassays reveal the potential feeding impact of the rabbitfish Siganus canaliculatus (f: Siganidae) on an inner-shelf reef of the Great Barrier Reef. Coral Reefs, 27 (3). pp. 605-615.

Fox, R.J., Bellwood, D.R. (2008). Direct versus indirect methods of quantifying herbivore grazing impact on a coral reef. Marine Biology, 154 (2). pp. 325-334.

Graham, E.M., Baird, A.H., Connolly, S.R. (2008). Survival dynamics of scleractinian coral larvae and implications for dispersal. Coral Reefs, 27 (3). pp. 529-539.

Harvell, C.D., Woodley, C., Raymundo, L., Sato, Y. (2008). Detecting and assessing outbreaks. In: Raymundo L, Couch CS, Harvell CD (eds) Coral Disease Handbook. Coral Reef Targeted Research and Capacity Building for Management Program, Melbourne, pp 65-74

Hoogenboom, M.O. (2008). Physiological models of performance for scleractinian corals. Unpublished doctoral dissertation, James Cook University, Townsville.

Horne, J.B., van Herwerden, L., Choat, J.H., Robertson, D.R. (2008). High population connectivity across the Indo-Pacific: congruent lack of phylogeographic structure in three reef fish congeners. Molecular Phylogenetics and Evolution, 49 (2). pp. 629-638.

Konow, N., Bellwood, D.R., Wainwright, P.C., Kerr, A.M. (2008). Evolution of novel jaw joints promote trophic diversity in coral reef fishes. Biological Journal of the Linnean Society, 93 (3). pp. 545-555.

Littman, R.A., van Oppen, M.J.H., Willis, B.L. (2008). Methods for sampling free-living Symbiodinium (zooxanthellae) and their distribution and abundance at Lizard Island (Great Barrier Reef). J. Exp. Mar. Biol. Ecol. 364:48-53

McCormick, M.I., Larson, J.K. (2008). Effect of hunger on the response to, and the production of, chemical alarm cues in a coral reef fish. Animal Behaviour, ISSN 1095-8282, 2008, Volume 75, Issue 6, pp. 1973 - 1980

Munday, P.L., Kingsford, M.J., O'Callaghan, M., Donelson, J.M. (2008). Elevated temperature restricts growth potential of the coral reef fish Acanthochromis polyacanthus. Coral Reefs. Vol. 27 Issue 4, p927-931. 5p.DOI: 10.1007/s00338-008-0393-4.

Page, C.A., Willis, B.L. (2008). Epidemiology of skeletal eroding band on the Great Barrier Reef and the role of injury in the initiation of this widespread coral disease. Coral Reefs 27:257-272

Palmer, C.V., Mydlarz, L.D., Willis, B.L. (2008). Evidence of an inflammatory-like response in non-normally pigmented tissues of two scleractinian corals. Proceedings of the Royal Society of London Series B, Biological Sciences, 275 (1652). pp. 2687-2693.

Schaffelke, B., McAllister, F. & Furnas, M. (2008). Water Quality and Ecosystem Monitoring Programme Reef Water Quality Protection Plan Report for the Great Barrier Reef Marine Park Authority.Australian Institute of Marine Science, Townsville. (83 p.).

Schonberg, C.H.L., Ortiz, J.C. (2008). Is sponge bioerosion increasing? Proceedings of the 11th International Coral Reef Symposium, Ft. Lauderdale, Florida, 7-11 July 2008, Session number 16.

Schonberg, C.H.L., Shields, G. (2008). Micro-computed tomography for studies on Entobia: transparent substrate versus modern technology. In Current developments in Bioerosion, Springer, Berlin, pp. 147 - 164

Schonberg, C.H.L. (2008). A history of sponge erosion: from past myths and hypothesis to recent approaches. In Current developments in Bioerosion, Springer, Berlin, pp. 147 - 164

Southgate, P.C. (2008). Pearl oyster culture. In: The Pearl Oyster. Elsevier, Oxford, UK, pp. 231-272.

Southgate, et al. (2008). Exploitation and culture of major commercial species. In: The Pearl Oyster. Elsevier, Oxford, UK, pp. 303-35

Sussman M, Willis BL, Victor S, Bourne DG (2008). Coral pathogens identified for white syndrome (WS) epizootics in the Indo-Pacific. PLoS ONE 3(6) e2393:1-14

Whalan, S., Ettinger-Epstein, P., Battershill, C., de Nys, R. (2008). Larval vertical migration and heirarchical selectivity of settlement in a brooding marine sponge. Marine Ecology Progress Series, 368, 145 -154. (pdf)

Whalan, S., Ettinger-Epstein, P., de Nys, R. (2008). The effect of temperature on larval pre-settlement duration and metamorphosis for the sponge, Rhopaloeides ordorabile. Coral Reefs, 27, 783 – 786. (pdf)

Whalan, S., Ettinger-Epstein, P., Battershill, C., de Nys, R. (2008). Larval vertical migration and hierarchical selectivity of settlement in a brooding marine sponge. Marine Ecology Progress Series, 368 . pp. 145-154.

2007

Acosta-Salmón, H., Jerry, D.R., Southgate, P.C. (2007). Effects of cryoprotectant agents and freezing protocol on motility of black-lip pearl oyster (Pinctada margaritifera L.) spermatozoa. Cryobiology, 54 (1). pp. 13-18.

Anthony, K.R.N., Kerswell, A.P. (2007). Coral mortality following extreme low tides and high solar radiation. Marine Biology, 151 (5). pp. 1623-1631.

Anthony, K.R.N., Connolly, S.R., Hoegh-Guldberg, O. (2007). Bleaching, energetics, and coral mortality risk: effects of temperature, light and sediment regime. Limnology and Oceanography, 52 (2). pp. 716-726.

Boyett, H.V., Bourne, D.G., Willis, B.L. (2007). Elevated temperature and light enhance progression and spread of black band disease on staghorn corals of the Great Barrier Reef. Marine Biology 151: 1711-1720

Bruno, J.F., Selig, E.R., Casey, K.S., Page, C.A., Willis, B.L., Harvell, C.D., Sweatman, H., Melendy, A.M. (2007). Thermal stress and coral cover as drivers of coral disease outbreaks. PLoS Biol. 5 (6):1-8

Cantin, N.E., Negri, A.P., Willis, B.L. (2007). Photoinhibition from chronic diuron exposure reduces reproductive output of reef-building corals. Mar Ecol Prog Ser 344:81-93

Ceccarelli, D.M. (2007). Modifcation of benthic communities by territorial damselfish: a multi-species comparison. Coral Reefs, DOI 10.1007/s00338-007-0275-1

Ettinger-Epstein, P., Whalan, S., Battershill, C.N., de Nys, R. (2007). Temperature cues gametogenisis and larval release in a tropical sponge. Marine Biology, 153, 171 – 178. (pdf)

Fox, R.J., Bellwood, D.R. (2007). Quantifying herbivory across a coral reef depth gradient. Marine Ecology Progress Series, 339 . pp. 49-59.

Frisch, A.J., Ulstrup, K.E., Hobbs, J.A. (2007). The effects of clove oil on coral: An experimental evaluation using Pocillopora damicornis (Linnaeus). Journal of Experimental Marine Biology and Ecology, ISSN 0022-0981, 2007, Volume 345, Issue 2, pp. 101 - 109

Graham, E. (2007). Settlement competence and survival in Azooxanthellate Scleractinian coral larvae. Unpublished honours dissertation. James Cook University, Townsville.

Harvell, C.D., Jordan, E., Merkel, S., Raymundo, L., Rosenberg, E., Smith, G., Weil, E., Willis, B.L. (2007). Coral disease, environmental drivers and the balance between coral and microbial associates. Oceanography 20:58-81

Hernaman, V., Munday, P.L. (2007). Evolution of mating systems in coral reef gobies and constraints on mating system plasticity. Coral Reefs, 26 (3). pp. 585-595.

Hopley, D., Smithers, S.G., Parnell, K.E. (2007). The Geomorphology of the Great Barrier Reef: development, diversity and change. Cambridge University Press, Cambridge, United Kingdom.

Hughes, T.P., Rodrigues, M.J., Bellwood, D.R., Ceccarelli, D., Hoegh-Guldberg, O., McCook, L., Moltschaniwskyj, N., Pratchett, MS., Steneck, R.S., Willis, B.L. (2007).Phase shifts, herbivory, and the resilience of coral reefs to climate change. Current Biology 17:360-65

Jones, et al (2007). Factors affecting the cycling of dimethylsulfide and dimethylsulfoniopropionate in coral reef waters of the Great Barrier Reef. Environmental Chemistry, 4 (5). pp. 310-322.

Klanten, S., Choat, J.H., van Herwerden, L. (2007). Extreme genetic diversity and temporal rather than spatial partitioning in a widely distributed coral reef fish. Marine Biology, 150 (4). pp. 659-670.

Louden, D., Whalan, S., Evans-Illidge, E., Wolff, C., de Nys, R. (2007). An assessment of the aquaculture potential of the tropical sponges Rhopaloeides ordorabile and Coscinoderma sp. Aquaculture, 270, 57 – 67. (pdf)

Luntz, S. (2007). FAT CORALS LIVE LONGER. Australasian Science, ISSN 1442-679X, 05/2007, Volume 28, Issue 4, p. 12

Ryen, C.A. (2007). Sex-specific growth dynamics in protogynous hermaphrodites. Unpublished Masters dissertation. James Cook University, Townsville.

Mantyka, C.S., Bellwood, D.R. (2007). Direct evaluation of macroalgal removal by herbivorous coral reef fishes. Coral Reefs, 26 (2). pp. 435-442.

Mantyka, C.S., Bellwood, D.R. (2007). Macroalgal grazing selectivity among herbivorous coral reef fishes. Marine Ecology Progress Series, 352 . pp. 177-185.

Whalan, S., Battershill, C., de Nys, R. (2007). Variability in reproductive output across a water quality gradient for a tropical marine sponge. Marine Biology, 153, 163- 169. (pdf)

Whalan, S., Battershill, C., de Nys, R. (2007). Sexual reproduction of the brooding sponge Rhopaloeides odorabile. Coral Reefs, 65, 655 – 663. (pdf)

Whinney, J.C. (2007). Physical conditions on marginal coral reefs. Unpublished doctoral dissertation. James Cook University, Townsville.

2006

Acosta-Salmón, H., Southgate, P.C. (2006). Wound healing after excision of mantle tissue from the Akoya pearl oyster, Pinctada fucata. Comparative Biochemistry and Physiology, Part A, ISSN 1531-4332, 2006, Volume 143, Issue 2, pp. 264 - 268

Beer, A.C., Southgate, P.C. (2006). Spat collection, growth and meat yield of Pinna bicolour (Gmelin) in suspended culture in northern Australia. Aquaculture, 258 (1-4). pp. 424-429.

Bellwood, D.R., Hughes, T.P., Hoey, A.S. (2006). Sleeping functional group drives coral-reef recovery. Current Biology, 16 (24). pp. 2434-2439.

Bellwood, D.R, Hoey, A.S, Ackerman, J.L, Depczynski, M. (2006). Coral bleaching, reef fish community phase shifts and the resilience of coral reefs. Global Change Biology, 12 (9). pp. 1587-1594.

Depczynski, M. (2006). Small cryptic fishes on coral reefs: A new perspective on reef fish ecology and life histories. Unpublished doctoral dissertation. James Cook University, Townsville.

Depczynski, M., Bellwood, D.R. (2006). Extremes, plasticity, and invariance in vertebrate life history traits: insights from coral reef fishes. Ecology, 87 (12). pp. 3119-3127.

Ettinger-Epstein, P. (2006). Natural products and their supply from the tropical sponge Luffariella variabilis. Unpublished doctoral dissertation. James Cook University, Townsville.

Fox, R.J. (2006). Quantifying the impact of roving herbivorous fishes across a reef gradient. Unpublished honours dissertation. James Cook University, Townsville.

Guenther, J., Southgate, P.C., de Nys, R. (2006). The effect of age and shell size on accumulation of fouling organisms on the Akoya pearl oyster Pinctada fucata (Gould). Aquaculture, 253 (1). pp. 366-373.

Guenther, J., de Nys, R. (2006). Differential community development of fouling species on the pearl oysters Pinctada fucata, Pteria penguin and Pteria chinensis (Bivalvia, Pteriidae). Biofouling, 22 (3). pp. 163-171.

Hopley, D. (2006). Fringing and Nearshore Coral Reefs of the Great Barrier Reef: Episodic Holocene Development and Future Prospects. Journal of Coastal Research, ISSN 1551-5036, 01/2006, Volume 22, Issue 1, pp. 175 - 187

Louden, D.J. (2006). Bath sponge aquaculture: Aspects of culture and quality. Unpublished masters dissertation. James Cook University, Townsville.

Manassa, R. (2006). The use of chemical alarm cues for predation risk assessment in coral reef fishes. Unpublished honours dissertation. James Cook University, Townsville.

Mantyka, C. (2006). A direct evaluation of macroalal removal and selectivity by herbivorous reef fishes. Unpublished honours dissertation. James Cook University, Townsville.

Page, C., Willis, B. (2006). Distribution, host range and large-scale spatial variability in black band disease prevalence on the Great Barrier Reef, Australia. Diseases of Aquatic Organisms, 69 (1). pp.41-51.

Perry, C.T., Smithers, S G. (2006). Taphonomic signatures of turbid-zone reef development: Examples from Paluma Shoals and Lugger Shoal, inshore central Great Barrier Reef, Australia. Palaeogeography, Palaeoclimatology, Palaeoecology, ISSN 0031-0182, 2006, Volume242, Issue 1, pp. 1 – 20

Pratchett, M.S., Pradjakusuma, O.A., Jones, G.P. (2006). Is there a reproductive basis to solitary living versus pair-formation in coral reef fishes? Coral Reefs, 25 (1). pp. 85-92.

Scardino, A.J. (2006). Biomimetic fouling control. Unpublished doctoral dissertation. James Cook University, Townsville

Schonberg, C.H.L., Grass, S., Heiermann, A.T. (2006). Ciliona miniscula, sp. Nov. (Hadromerida : Clionadae) and other bioeroding sponges that only contain tylostyles. Zootaxa, 1312, 1-24.

Schonberg, C.H.L. (2006). Growth and erosion of the Zooxanthellate Australian bioeroding sponge Ciliona Orientalis are enhanced in light. Conference Proceedings 10th annual International Coral Reef Symposium, Okinawa, Japan, 168-174.

Schonberg, C.H.L., Tapanila, L. (2006). The bioeroding sponge Aka paratypica: A modern tracemaking analogue for the Paleozic Ichnogenus Entobia devonica. Ichnos, 13, 147-157.

Sofonia, J.J. (2006). Sediment responses of corals from inshore reefs, Great Barrier Reef Australia. Unpublished masters dissertation. James Cook University, Townsville.

Whalan, S. (2006). Reproduction, larval dispersal and population genetics of the sponge Rhopaloeides odorabile. Unpublished doctoral dissertation. James Cook University, Townsville.

Willis, B.L., van Oppen, M.J.H., Miller, D.J., Vollmer, S.V., Ayre, D.J. (2006). The role of hybridization in the evolution of reef corals. Annual Review of Ecology, Evolution, and Systematics, 37. pp. 489-517.

Yukihira, H., Lucas, J.S., Klumpp. (2006). The pearl oysters, Pinctada maxima and P. margaritifera, respond in different ways to culture in dissimilar environments. D.W. Aquaculture. Vol. 252 Issue 2-4, p208-224. 17p. DOI: 10.1016/j.aquaculture.2005.06.032.

2005

Acosta-Salmon, H., Southgate, P. C. (2005). Histological changes in the gonad of the blacklip pearl oyster (Pinctada margaritifera Linnaeus, 1758) during the reproductive season in North Queensland, Australia. Molluscan Research, 25 (2). pp. 71-74.

Bay, L. K. (2005). The population genetic structure of coral reef fishes on the Great Barrier Reef. Unpublished doctoral dissertation. James Cook University, Townsville.

Birrell, C.L., McCook, L.J., Willis, B.L. (2005). Effects of algal turfs and sediment on coral settlement. Marine Pollution Bulletin, 51 (1-4). pp. 408-414.

Buechler, K. (2005). An evolution of geographic variation in the life history and behaviour of anemonefishes: A common-garden approach. Unpublished doctoral dissertation. James Cook University, Townsville.

Daley, B. (2005). Changes in the Great Barrier Reef since European settlement. Unpublished honours dissertation. James Cook University, Townsville.

Devlin, M. (2005). Spatial and temporal patterns of flood plumes in the Great Barrier Reef, Australia. Unpublished doctoral dissertation. James Cook University, Townsville.

Hernaman, V., Munday, P.L. (2005) Life-history characteristics of coral reef gobies. I. Growth and life-span. Marine Ecology Progress Series, 290 . pp. 207-221.

Konow, N. (2005). Feeding ecomorphology in angelfishes, f. Pomacanthidae: The implications of functional innovations on prey-dislodgement in biting reef fishes. Unpublished doctoral dissertation. James Cook University, Townsville.

Konow, N., Bellwood, D.R. (2005). Prey-capture in Pomacanthus semicirculatus (Teleostei, Pomacanthidae): functional implications of intramandibular joints in marine angelfishes. Journal of Experimental Biology, 208 (8). pp. 1421-1433.

Larson, J.K., McCormick, M.I. (2005). The role of chemical alarm signals in facilitating learned recognition of novel chemical cues in a coral reef fish. Animal Behaviour, ISSN 1095-8282, 2005, Volume 69, Issue 1, pp. 51 – 57

Lopez-Yglesias, M.A. (2005). Role of food availability in the severity of bleaching and recovery of the coral Acopora intermedia. Unpublished honours dissertation. James Cook University, Townsville.

Marquis, C.P., Baird, A.H., de Nys, R., Holmström, C., Koziumi, N. (2005). An evaluation of the antimicrobial properties of the eggs of 11 species of scleractinian corals. Coral Reefs, 24 (2). pp. 248-253.

Moothien P.R., Willis B.L., Terashima H. (2005). Trends in the density of zooxanthellae in Acropora millepora (Ehrenberg, 1834) at the Palm Island group, Great Barrier Reef, Australia. Symbiosis 38:209-226

Moss, et al. (2005). Water quality guidelines for the Great Barrier Reef World Heritage Area: a basis for development and preliminary values. Marine Pollution Bulletin, 51 (1). pp. 76-88.

Schonberg, C.H.L., Loh, W.K.W. (2005). Molecular identity of the unique symbiotic dinoflagellates found in the bioeroding demosponge Ciliona orientalis. Marine Ecology Progress Series, 299, 157-166.

Sinclair, D.J., (2005). Correlated trace element “vital effects” in tropical corals: A new geochemical tool for probing biomineralization. Geochimica et Cosmochimica Acta, ISSN 0016-7037, 2005, Volume 69, Issue 13, pp. 3265 - 3284

Sinclair, D.J. (2005). Non-river flood barium signals in the skeletons of corals from coastal Queensland, Australia. Earth & Planetary Science Letters. Vol. 237 Issue 3/4, p354-369. 16p. DOI: 10.1016/j.epsl.2005.06.039.

Yukihira, H., Lucas, J.S., Klumpp, D.W. (2005). The pearl oysters, Pinctada maxima and P. margaritifera, respond in different ways to culture in dissimilar environments. In Aquaculture. 252(2):208-224 Language: English. DOI: 10.1016/j.aquaculture.2005.06.032

2004

Ackerman, J. L. (2004). Geographic Variation in Size at Age of the Coral Reef Fish, Thalassoma Lunare (Family : Labridae): A Contribution to Life History Theory.Unpublished doctoral dissertation. James Cook University, Townsville.

Ackerman, John L., Bellwood, David R., and Brown, James H. (2004) The contribution of small individuals to density-body size relationships: examination of energetic equivalence in reef fishes. Oecologia, 139 (4). pp. 568-571.

Acosta-Salmon, H. (2004). Broodstock Management and Egg Quality of the Pearl Oysters Pinctada margaritifera and Pinctada fucata. Unpublished doctoral dissertation. James Cook University, Townsville.

Baird, Andrew H., and Morse, Aileen N.C. (2004) Induction of metamorphosis in larvae of the brooding corals Acropora palifera and Stylophora pistillata. Marine and Freshwater Research, 55 (5). pp. 469-472.

Bastidas, C., Fabricius, K.E., and Willis, B.L. (2004). Demographic aspects of the soft coral Sinularia flexibilis leading to local dominance on coral reefs. Hydrobiologia, 530 (1-3). pp. 433-441.

Ceccarelli, D. M. (2004). Herbivorous Fishes as Determinants of the Structure of Coral Reef Communities: Farmers, Foragers and their Interactions. Unpublished doctoral dissertation. James Cook University, Townsville.

Clarke, C. L. (2004) The ecological role of sea hares (Opisthobranchia: Anaspidea) within tropical intertidal habitats. Unpublished masters dissertation. James Cook University, Townsville.

Davis, K.L.F., Russ, G.R., Williamson, D.H., and Evans, R.D. (2004) Surveillance and poaching on inshore reefs of the Great Barrier Reef Marine Park. Coastal Management, 32 (4). pp. 373-387.

Depczynski, M., and Bellwood, D.R. (2004) Microhabitat utilisation patterns in cryptobenthis coral reef fish communities. Marine Biology, 145 (3). pp. 455-463.

Evans, R.D., and Russ, G.R. (2004) Larger biomass of targeted reef fish in the no-take marine reserves on the Great Barrier Reef, Australia. Aquatic Conservation: marine and freshwater ecosystems , 14 (5). pp. 505-519.

Jones, C. M., Grutter, A. S., Cribb, T. H. (2004). Cleaner fish become hosts

Pit, J. H. (2004). Feasibility of Akoya Pearl Oyster Culture in Queensland. Unpublished doctoral dissertation. James Cook University, Townsville.

True, J. (2004). Massive Porites corals as indicators of environmental change.Unpublished doctoral dissertation. James Cook University, Townsville.

Walker, Stefan P.W., and McCormick, Mark I. (2004) Otolith-check formation and accelerated growth associated with sex change in an annual protogynous tropical fish.Marine Ecology Progress Series, 266 . pp. 201-212.

Williamson, D.H., Russ, G.R., and Ayling, A.M. (2004) No-take marine reserves increase abundance and biomass of reef fish on inshore fringing reefs of the Great Barrier Reef. Environmental Conservation, 31 (2). pp. 149-159. 81.

2003

Ackerman, J.L., Bellwood, D.R. (2003). The contribution of small individuals to density-body size relationships. Oecologia, 136 (1). pp. 137-140.

Babcock, R.C., Baird, A.H., Piromvaragorn, S., Thomson, D.P., Willis, B.L. (2003).Identification of scleractinian coral recruits from Indo-Pacific reefs. Zoological Studies, 42 (1). pp. 211-226.

Baird, A.H., Babcock, R.C., Mundy, C.P. (2003). Habitat selection by larvae influences the depth distribution of six common coral species. Marine Ecology Progress Series, 252 . pp. 289-293.

Birrell, C.L. (2003). Influences of benthic algae on coral settlement and post-settlement survival: implications for the recovery of disturbed and degraded reefs. Unpublished masters dissertation. James Cook University, Townsville.

Burrage, D.M., Heron, M.L., Hacker, J.M., Miller, J.L., Stieglitz, T.C., Steinberg, C.R., Prytz, A. (2003). Structure and influence of tropical river plumes in the Great Barrier Reef: application and performance of an airborne sea surface salinity mapping system. Remote Sensing of Environment, 85 (2). pp. 204-220.

Depczynski, M., Bellwood, D. R. (2003). The role of cryptobenthic reef fishes in coral reef trophodynamics. Marine Ecology Progress Series, 256 . pp. 183-191

Frazer, I. (2003). Conservationism and farming in North Queensland, 1861-1970. Unpublished masters dissertation. James Cook University, Townsville.

Graham, N.A.J., Evans, R.D., Russ, G.R. (2003). The effects of marine reserve protection on the trophic relationships of reef fishes on the Great Barrier Reef. Environmental Conservation, 30 (2). pp. 200-208

Hubble, M. (2005). The Ecological Significance of Body Size in Tropical Wrasses (Pisces : Labridae).Unpublished doctoral dissertation. James Cook University, Townsville.

Larson, J. (2005). The Use of Chemical Alarm Signals in Tropical Coral Reef Fishes. Unpublished honours dissertation. James Cook University, Townsville.

Leggat, W., Buck, B.H., Grice, A., Yellowlees, D. (2003). The impact of bleaching on the metabolic contribution of dinoflagellate symbionts to their giant clam host. Plant, Cell & Environment, 26 (12). pp. 1951-1961

Leuzinger, S., Anthony, K., Willis, B. L. (2003). Reproductive energy investment in corals: scaling with module size. Oecologia, 136 (4). pp. 524-531.

Lucas, J.S., Southgate P.C. (eds). (2003). Aquaculture: Farming Aquatic Animals and Plants. Blackwell Science, pp. 504

Pit, J.H., Southgate, P.C. (2003). Should slow growing pearl oyster (Pinctada margaritifera) spat (Runts) be discarded? Journal of Shellfish Research, 22 (3). pp. 773-775.

Pit, J.H., Southgate, P.C. (2003). Fouling and predation; how do they affect growth and survival of the blacklip pearl oyster, Pinctada margaritifera, during nursery culture? Aquaculture International, 11 (6). pp. 545-555

Pocock, C.A. (2003). Romancing the Reef: history, heritage and the hyper-real. Unpublished doctoral dissertation. James Cook University, Townsville.

Schonberg, H.L. (2003). Substrate effects on the Bioeroding Demosponge Cliona orintalis: Substrate Colonisation and tissue growth. Marine Ecology, 24 (1) 59-74.

Steer, M.A., Semmens, J.M. (2003). Pulling or drilling, does size or species matter? An experimental study of prey handling in Octopus dierythraeus (Norman, 1992). Journal of Experimental Marine Biology and Ecology, ISSN 0022-0981, 2003, Volume 290,Issue 2, pp. 165 – 178

2002

Ackerman, J.L., Bellwood, D.R. (2002). Comparative efficiency of clove oil and rotenone for sampling tropical reef fish assemblages. Journal of Fish Biology, 60 (4). pp. 893-901

Baird, A.H., Marshall, P.A. (2002). Mortality, growth and reproduction in scleractinian corals following bleaching on the Great Barrier Reef. Marine Ecology Progress Series, 237 . pp. 133-141

Barnes, L.M . (2002). The Role of Clear Water Mangroves in the Ecology of Reef Fishes on The Great Barrier Reef. Unpublished honours dissertation, James Cook University, Townsville.

Berkelmans, R. (2002). Time-integrated thermal bleaching thresholds of reefs and their variation on the Great Barrier Reef. Vol. 229: 73–82. Published March 20.

Bastidas, A.C. (2002). Population Dynamics and Genetic Structure of Locally Dominant Species on Coral Reefs: A Case study of the Soft Corals Sinularia Flexibilis and Clavularia koellikeri. Unpublished doctoral dissertation, James Cook University, Townsville.

Buck, B.H., Rosenthal, H., Saint-Paul, U. (2002). Effect of increased irradiance and thermal stress on the symbiosis of Symbiodinium microadriaticum and Tridacna gigas. Aquatic Living Resources, ISSN 0990-7440, 2002, Volume 15, Issue 2, pp. 107 - 117

Burrage, D.M., Heron, M.L., Hacker, J.M., Stieglitz, T.C., Steinberg, C.R., & Prytz, A. (2002). Evolution and dynamics of tropical river plumes in the Great Barrier Reef: an integrated remote sensing and in situ study. Journal of Geophysical Research: oceans, 107 (12). pp. 1-17.

Diaz-Pulido, G., McCook, L.J. (2002). The fate of bleached corals: patterns and dynamics of algal recruitment. The fate of bleached corals: patterns and dynamics of algal recruitment. Marine Ecology Progress Series, 232 . pp. 115-128.

Doroudi, M.S., Southgate, P.C. (2002). The effect of chemical cues on settlement behaviour of blacklip pearl oyster (Pinctada margaritifera) larvae. Aquaculture, 209 (1-4). pp. 117-124.

Gralton, C. (2002). Coral Recovery on Inshore Reefs in the Palm Islands following the 1998 Coral Bleaching Event. Unpublished honours dissertation, James Cook University, Townsville.

Howarth, G.J. (2002). The Influence of Oceanography and Drifting Objects on the Distribution and Abundance of Early Life History Stage Fishes on the Great Barrier Reef. Unpublished honours dissertation, James Cook University, Townsville.

Kennedy, D.M., Woodroffe, C.D. (2002). Fringing reef growth and morphology: a review. Earth Science Reviews, ISSN 0012-8252, 2002, Volume 57, Issue 3, pp. 255 - 277

Kritzer, J.P. (2002). Variation in the population biology of stripey bass Lutjanus carponotatus within and between two island groups on the Great Barrier Reef. Marine Ecology Progress Series, 243 . pp. 191-207.

Negri, A.P., Smith, L.D., Webster, N.S., Heyward, A.J. (2002). Understanding ship-grounding impacts on a coral reef: potential effects of anti-foulant paint contamination on coral recruitment. Marine pollution bulletin, ISSN 0025-326X, 02/2002, Volume 44, Issue 2, pp. 111 - 117

Van Oppen1, M.J.H., Willis, B.L., Van Rheede, T., Miller, D.J. (2002). Spawning times, reproductive compatibilities and genetic structuring in the Acropora aspera group: evidence for natural hybridization and semi-permeable species boundaries in corals. Molecular Ecology. Volume 11, Issue 8, pages 1363–1376

Mackensie, J. B. (2002). Population - Species Architecture of Corals in the Acropora Nasuta Group. Unpublished doctoral dissertation, James Cook University, Townsville.

Marshall, J.F., McCulloch, M.T. (2002). An assessment of the Sr/Ca ratio in shallow water hermatypic corals as a proxy for sea surface temperature. Geochimica et Cosmochimica Acta, ISSN 0016-7037. Volume 66, Issue 18, pp. 3263 - 3280

Márquez, L.M. (2002). Interspecific hybridization in Acropora (Cnidaria: Scleractinia): mechanisms and evolutionary consequences. Unpublished doctoral dissertation, James Cook University, Townsville.

O'Connor, W.A. (2002). Latitudinal variation in reproductive behavior in the pearl oyster, Pinctada albina sugillata. Aquaculture, ISSN 0044-8486. Volume 209, Issue 1, pp. 333 - 345

Olivier, F., Ridd, M., Klumpp, D. (2002). The use of transplanted cultured tropical oysters ( Saccostrea commercialis) to monitor Cd levels in North Queensland coastal waters (Australia). Marine Pollution Bulletin, ISSN 0025-326X. Volume 44, Issue 10, pp. 1051 - 1062

Pradjakusuma, O. A.(2002). Relationship between Pair Formation and Reproductive Biology in Coral Reef Fishes. Unpublished honours dissertation, James Cook University, Townsville.

Schonberg, C. H. L. (2002). Substrate Effects on the Bioeroding Demosponge Ciliona orientalis: Bioerosion rates. Marine Ecology, 23 (4), 313-326.

Schonberg, C. H. L. (2002). Sponges of the Ciliona viridis complex: A key for species identification.

Seebacher, F., Alford, R.A. (2002). Shelter Microhabitats Determine Body Temperature and Dehydration Rates of a Terrestrial Amphibian (Bufo marinus). Journal of Herpetology, ISSN 0022-1511, 03/2002, Volume 36, Issue 1, pp. 69 - 75

van Oppen, M.J.H., Willis, B.L., van Rheede, T., Miller, D.J. (2002). Spawning times, reproductive compatibilities and genetic structuring in the Acropora aspera group: evidence for natural hybridization and semi-permeable species boundaries in corals. Molecular Ecology, 11 (8). pp. 1363-1376.

2001

Aitsi, J., Maniwavie, T., Munday, P.L., Rewald, J., Wagner, T.P. (2001). Recovery of corals after volcanic eruptions in Papua New Guinea. Coral Reefs. Vol. 20 Issue 1, p24. 0p.

Baird, A.H. (2001). The Ecology of Coral Larvae: Settlement Patterns, Habitat Selection and the length of the Larval Phase. Unpublished doctoral dissertation, James Cook University, Townsville.

Baird, A. H., Pratchett, M. S., Gibson, D.J., Koziumi, N., Marquis, C.P. (2001)Variable palatability of coral eggs to a planktivorous fish. Marine and Freshwater Research, 52 (6). pp. 865-868.

Berkelmans, R. (2001). Bleaching, Upper Thermal Limits and Temperature Adaptation In Coral Reefs. Unpublished doctoral dissertation, James Cook University, Townsville.

Depczynski, M. (2001). The Role of Cryptobenthic Fishes on Coral Reefs. Unpublished honours dissertation, James Cook University, Townsville.

Devlin, M. et al. (2001). Flood plumes in the Great Barrier Reef : spatial and temporal patterns in composition and distribution. Report. Great Barrier Reef Marine Park Authority, Townsville, Australia

Doroudi.M. S. (2001). Development and Culture of Black-Lip Pearl Oyster, Pinctada margaritifera (Linnaeus) Larvae. Unpublished doctoral dissertation, James Cook University, Townsville.

Koop, K., et al (2001) ENCORE: the effect of nutrient enrichment on coral reefs. Synthesis of results and conclusions. Marine Pollution Bulletin, 42 (2). pp. 91-120

Kritzer, J.P. (2001). Patterns of Spatial Variation in the Population Biology of a Coral Reef Fish and Implications for Metapopulation Dynamics. Unpublished doctoral dissertation, James Cook University, Townsville.

Larcombe, P., Costen, A.R., and Woolfe, K.J. (2001). The hydrodynamic and sedimentary setting of nearshore coral reefs, central Great Barrier Reef shelf, Australia: Paluma Shoals, a case study. Sedimentology Online, 48 (4). pp. 811-835.

Leuzinger, S. (2001). Energy Allocation Patterns in Scleractinian Corals. Unpublished honours dissertation, James Cook University, Townsville.

Maida, M., Sammarco, P. W. and Coll, J. C. (2001). Effects of Soft Corals on Scleractinian Coral Recruitment. II: Allelopathy, Spat Survivorship and Reef Community Structure. Marine Ecology, 22: 397–414. doi: 10.1046/j.1439-0485.2001.01709.x

Mosse, J. W. (2001). Population Biology of Cephalopholis cyanostigma (Serranidae) of the Great Barrier Reef, Australia. Unpublished doctoral dissertation, James Cook University, Townsville.

Ralston, E. (2001). Temporal and vertical patterns of abundance in mobile invertebrates and predatory effects of brachyuran crabs on suspended culture of pearl oysters at Orpheus Island. Unpublished doctoral dissertation, James Cook University, Townsville.

Schonberg, C.H.L. (2001). New mechanisms in demosponge spicule formation. Journal of Marine Biology, 81, 345-346.

Schonberg, C.H.L. (2001). Small scall distribution of Great Barrier Reef Bioeroding sponges in shallow water. Orphelia, 55 (1), 39-54

Schonberg, C.H.L., Wilkinson, C.R. (2001). Induced colonization of corals by a cilonid bioeroding sponge. Coral Reefs, 20, 69-76.

Schonberg, C.H.L. (2001). Estimating the extent of Endolithic Tissue of a Great Barrier Reef Cilionid Sponge. Senckenbergianax maritimsa, 31 (1), 29-39.

Wilson, S.K. (2001). An Investigation into the Trophic Nature of Small Reef Fish from the tribe Salariini, family Blenniidae. Unpublished doctoral dissertation, James Cook University, Townsville.

2000

Ackerman, J.L., Bellwood, D.R. (2000). Reef fish assemblages: a re-evaluation using enclosed rotenone stations. MARINE ECOLOGY PROGRESS SERIES; 2000; 206; p227-p237

Anthony, K.R.N., Fabricius, K.E. (2000). Shifting roles of heterotrophy and autotrophy in coral energetics under varying turbidity. Journal of Experimental Marine Biology and Ecology, ISSN 0022-0981, 2000, Volume 252, Issue 2, pp. 221 - 253

Beer, A.R., Southgate, P.C. (2000). Collection of pearl oyster (family Pteriidae) spat at Orpheus Island, Great Barrier Reef (Australia). Journal of Shellfish Researc, ISSN: 821-826, pp. 821-826

Esslemont, G. (2000). Heavy metals in seawater, marine sediments and corals from Townsville section, Great Barrier Reef Marine Park, Queensland. Marine Chemistry, 71 (3), pp. 215-231.

Gagan, M.K. et al. (2000). New views of tropical paleoclimates from corals. Quaternary Science Reviews, ISSN 0277-3791, 2000, Volume 19, Issue 1, pp. 45 - 64

Haynes, D., Johnson, J.E. (2000). Organochlorine, Heavy Metal and Polyaromatic Hydrocarbon Pollutant Concentrations in the Great Barrier Reef (Australia) Environment: a Review. Marine Pollution Bulletin, ISSN 0025-326X, 2000, Volume 41, Issue 7, pp. 267 - 278

Jones, G.B., Mercurio, P., Olivier, F. (2000). Zinc in Fish, Crabs, Oysters, and Mangrove Flora and Fauna from Cleveland Bay. Marine Pollution Bulletin, ISSN 0025-326X, 2000, Volume 41, Issue 7, pp. 345 - 352

Lewis, A.R. (2000). The Temporal Dynamics of Populations of Fishes on Large Patch Reefs and their Responses to Experimental Coral Disturbance. Unpublished doctoral dissertation, James Cook University, Townsville.

McCulloch, M.T., Esat, T. (2000). The coral record of last interglacial sea levels and sea surface temperatures. Chemical Geology, ISSN 0009-2541, 2000, Volume 169, Issue 1, pp. 107 - 129

Michalek-Wagner, K., Bowden, B.F. (2000). Effects of bleaching on secondary metabolite chemistry of alcyonacean soft corals. Journal of Chemical Ecology, 26 (7). pp. 1543-1562

Plathong, S., Inglis, G.J., Huber, M.E. (2000). Effects of Self-Guided Snorkeling Trails on Corals in a Tropical Marine Park. Conservation Biology. Vol. 14 Issue 6, p1821-1830. 10p. 10 Graphs.

Reichelt-Brushett, A.J and Harrison, P.L. (2000). The Effect of Copper on the Settlement Success of Larvae from the Scleractinian Coral Acropora tenuis. Marine Pollution Bulletin, ISSN 0025-326X, 2000, Volume 41, Issue 7, pp. 385 - 391

Schönberg, C.H.L. (2000). Bioeroding sponges common to the Central Australian Great Barrier Reef: description of three new species, two new records, and additions to two previously described species. Senckenbergiana marit 30: 161-221.

Schönberg, C.H.L, Wilkinson, C.R. (2000). Induced colonization of Great Barrier Reef corals by a clionid bioeroding sponge. Coral Reefs.

Southgate, P.C., Beer, A.C. (2000). Growth of blacklip pearl oyster (Pinctada margaritifera) juveniles using different nursery culture techniques. Aquaculture, ISSN 0044-8486, 2000, Volume 187, Issue 1, pp. 97 - 104

Triboa, G.K. (2000). Factors Affecting Growth and Survival of the Pearl Oyster, Pinctada maxima (Jameson) during Grow-Out Culture. Unpublished masters dissertation, James Cook University, Townsville.

Venturato, S.P. (2000). Evaluation of a Seawater Pumping System. Unpublished honours dissertation, James Cook University, Townsville.

Woodroffe, C.D., Kennedy, D.M., Hopley, D., Rasmussen, C.E., Smithers, S.G. (2000). Holocene reef growth in Torres Strait. Marine Geology, ISSN 0025-3227, 2000, Volume 170, Issue 3, pp. 331 - 346

Yukihira, H., Lucas, J.S., Klumpp., D.W. (2000). Comparative effects of temperature on feeding and energy budgets of the pearl oysters Pinctada margaritifera and P. maxima. Marine Ecology Progress Series 195: 179-188.

1999

Anthony, K.R.N. (1999). Coral suspension feeding on fine particulate matter. Journal of Experimental Marine Biology and Ecology, ISSN 0022-0981, 1999, Volume 232,Issue 1, pp. 85 - 106

Berkelmans, R., Willis, B.L. (1999). Seasonal and local spatial patterns in the upper thermal limits of corals on the inshore Central Great Barrier Reef. CORAL REEFS. 3; p219-p228

Esslemont, G. (1999). Heavy Metals in Corals From Heron Island and Darwin Harbour, Australia. Marine Pollution Bulletin, ISSN 0025-326X, 1999, Volume 38, Issue 11, pp. 1051 - 1054

König, G.M., Wright, A.D., Linden, A. (1999). Plocamium hamatum and its monoterpenes: chemical and biological investigations of the tropical marine red alga. Phytochemistry, ISSN 0031-9422, 1999, Volume 52, Issue 6, pp. 1047 - 1053

Michalek-Wagner, K. (1999). The Chemical Ecology of the Soft Coral-Zooxanthellae Association and its Significance to the Bleaching Process. Unpublished doctoral dissertation, James Cook University, Townsville.

Seebacher, F., Alford, R.A. (1999). Movement and Microhabitat Use of a Terrestrial Amphibian (Bufo marinus) on a Tropical Island: Seasonal Variation and Environmental Correlates. Journal of Herpetology, ISSN 0022-1511, 06/1999, Volume 33, Issue 2, pp. 208 – 214

1998

Aceret, T.L., Coll, J.C., Uchio, Y., Sammarco, P.W. (1998). Antimicrobial activity of the diterpenes flexibilide and sinulariolide derived from Sinularia flexibilis Quoy and Gaimard 1833 (Coelenterata: Alcyonacea, Octocorallia). Comparative Biochemistry And Physiology. Part C, Pharmacology, Toxicology & Endocrinology [Comp Biochem Physiol C Pharmacol Toxicol Endocrinol], ISSN: 1367-8280, 1998 Jul; Vol. 120 (1), pp. 121-6; PMID: 9827024

Baird, A.H., Marshall, P.A. (1998). Mass bleaching of corals on the Great Barrier Reef. Volume 17, Issue 4, p 376.

Gagan, M.K. et al. (1998). Temperature and Surface-Ocean Water Balance of the Mid-Holocene Tropical Western Pacific. Science, ISSN 0036-8075, 02/1998, Volume 279, Issue 5353, pp. 1014 - 1018

Plathong, S. (1998). Impact of self-guided snorkelling trails on coral reef benthos.

Southgate, P.C., Ito, M. (1998). Evaluation of a partial flow-through culture technique for pearl oyster ( Pinctada margaritifera L.) larvae. Aquacultural Engineering, ISSN 0144-8609, 1998, Volume 18, Issue 1, pp. 1 – 7

Southgate, P.C., Beer, A.C., Duncan, P.F., Tamburri, R. (1998). Assessment of the nutritional value of three species of tropical microalgae, dried Tetraselmis and a yeast-based diet for larvae of the blacklip pearl oyster, Pinctada margaritifera (L.). Aquaculture, ISSN 0044-8486, 1998, Volume 162, Issue 3, pp. 247 - 257

1997

Ackerman, J.L. (1997). A description of the reef fish assemblage at Orpheus Island, Great Barrier Reef. Unpublished doctoral dissertation, James Cook University, Townsville.

Boglio, E.C., Lucas, J.S. (1997). Impacts of ectoparasitic gastropods on growth, survival, and physiology of juvenile giant clams (Tridacna gigas), including a simulation model of mortality and reduced growth rate. Aquaculture, Volume 150; 1-2; p25-p43

Castell, L.L. (1997). Population studies of juvenile Trochus niloticus on a reef flat on the north-eastern Queensland coast, Australia. Marine and Freshwater Research, ISSN 1323-1650, 1997, Volume 48, Issue 3, pp. 211 - 217

Castell, L.L., Sweatman, H.P.A. (1997). Predator-prey interactions among some intertidal gastropods on the Great Barrier Reef. Journal of Zoology, ISSN 0952-8369, 01/1997, Volume 241, pp. 145 - 159

Plathong, S. (1997). Impact of self-guided snorkelling trails on coral reef benthos. Unpublished honours dissertation, James Cook University, Townsville.

1996

Bird, P.T. (1996). Optimisation of population estimates of ciguatera dinoflagellates: field assay analysis. Unpublished doctoral dissertation, James Cook University, Townsville.

Castell, L.L., Naviti, W., Nguyen, F. (1996). Detectability of cryptic juvenile Trochus niloticus Linnaeus in stock enhancement experiments, Aquaculture, 144 (1), pp. 91-101, ISSN 0044-8486, 10.1016/S0044-8486(96)01320-8.

Castell-Perez, L. (1996). Ecology of wild and juvenile Trochus niloticus relevant to the use of juveniles for population enhancement. Unpublished doctoral dissertation, James Cook University, Townsville.

1995

Aceret, T.L., Sammarco, P.W., Coll, J.C. (1995). Effects of diterpenes derived from the soft coral sinularia-flexibilis on the eggs, sperm and emryos of the scleratinian corals montipora-digitata and acropora-tenuis. Marine Biology, Vol 122 Issue 2, pp317-323

Beer, A.C. (1995). Spat collection and growth of juvenile pearl oysters (family Pterlidae) at Pioneer Bay, Orpheus Island. Unpublished doctoral dissertation, James Cook University, Townsville.

Coll, J., et. al. (1995). Chemical aspects of mass spawning in corals. II. (-)- Epi-thunbergol, the sperm attractant in the eggs of the soft coral Lobophytum crassum (Cnidaria: Octocorallia). Marine Biology. Vol. 123 Issue 1, p137-143. 7p. DOI: 10.1007/BF00350332.

Duquesne, S.J; Coll, J.C. (1995). Metal accumulation in the clam Tridacna crocea under natural and experimental conditions. Aquatic Toxicology, Volume 32, Issue 2.3, pp239 - 253

Kawasaki, H. (1995). Fish-habitat interactions in a coral reef damselfish, Pomacentrus amboinensis Bleeker: The effects of habitat on spacing behaviour. Unpublished doctoral dissertation, James Cook University, Townsville.

Maida, M., Sammarco, P.W., Coll, J.C. (1995). Effects of soft corals on scleractinian coral recruitment. Directional allelopathy and inhabitation of settlement. Marine Ecology Progress Series, Volume 121, Issue 1-3, pp191 - 202

Maida, M., Sammarco, P.W., Coll, J.C. (1995). Preliminary Evidence for Directional Allelopathic Effects of the Soft Coral Sinularia Flexibilis (Alcyonacea: Octocorallia) on Scleractinian Coral Recruitment. Bulletin of Marine Science, ISSN 0007-4977, 01/1995, Volume 56, Issue 1, p. 303

Santurtun, S. (1995). Catch structure and dynamics of Antillean “Z” traps on a coral reef: interaction between trap characteristics and fish behaviour. Unpublished doctoral dissertation, James Cook University, Townsville.

1994

Cumming, R.L., Alford, R.A. (1994). Population dynamics of Turbonilla sp. (Pyramidellidae, Opisthobranchia), an ectoparasite of giant clams in mariculture. Journal of Experimental Marine Biology and Ecology, ISSN 0022-0981, 1994, Volume 183,Issue 1, pp. 91 – 111

Fromont, J., Bergquist, P.R. (1994). Reproductive-biology of 3 sponge species og the genus Xestospongia (PORIFERA, DEMOSPONGIAE, PETROSIDA) from the great-barrier-reef. CORAL REEFS. 13; 2; p119-p126

Lindsay, S.R. (1994). The reproductive seasonality of two tropical rock oyster, Crassostrea echinata (Quoy and Galmard) and C. Sedea (Iredale, from north Queensland, Australia. Unpublished doctoral dissertation, James Cook University, Townsville.

Lucas, J.S. (1994). Biology, exploitation, and mariculture of giant clams (Tridacnidae). Reviews in Fisheries Science 2: 181-223.

Maida, M., Coll, J.C., Sammarco, P.W. (1994). Shedding new light on scleractinian coral recruitment. JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY. 180; 2; p189-p202

1993

Belda, C.A., Cuff, C., Yellowlees, D. (1993). Modification of shell formation in the giant clam Tridacna gigas at elevated nutrient levels in sea water. Marine Biology 117, 251-257

Bick, N. (1993). Science Times: Australian navy helps endangered giant clams to relocate New York Times, ISSN 0362-4331, 04/06/1993, Late Edition

Cumming, R.L. (1993). Reproduction and Variable Larval Development of an Ectoparasitic Snail, Turbonilla sp. (Pyramidellidae, Opisthobranchia), on Cultured Giant Clams. Bulletin of Marine Science, ISSN 0007-4977, 03/1993, Volume 52, Issue 2, p. 760

Norton, J.H., Braley, R.D., Anderson, I.G. (1993). A quarantine protocol to prevent the spread of parasitic diseases of giant clams (Tridacnidae) via translocation. In: Fitt, W. (Ed.) The Biology and Mariculture of Giant Clams. ACIAR Proceedings No. 47, Canberra.

Maida, M., Coll, J.C., Sammarco, P.W. (1993). A simple current direction meter and its applicability to marine ecological-studies. JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY. 174; 1; p115-p119

1992

Braley, R.D. (1992) The Giant Clam: Hatchery and Nursery Culture Manual. ACIAR Monograph No. 15, Canberra.

Norton, J.H. and Jones, G.W. (1992) The Giant Clam: An Anatomical and Histological Atlas. ACIAR Monograph, Canberra.

1991

Lynch, T.P. (1991). The poecllogonic reproductive strategy and associated life-history tactics of Turbonilla sp. (Gastropoda: Pyramidellidae) from Orpheus Island Research Station, North Queensland, Australia. Unpublished doctoral dissertation, James Cook University, Townsville.

O’Keeffe, M.J. (1991). Over and Under: geography and archaeology of the Palm Islands and adjacent continental shelf of North Queensland. Unpublished doctoral dissertation, James Cook University, Townsville.

Ryland, J.S., Babcock, R.C. (1991). Annual cycle og gametogenesis and spawning in a zoanthid, protopalythoa sp. Hydrobiologia. 216; p117-p123

1990

Hart, A. M. . (1990). Use of visual census and fish traps to determine distribution and abundance of butterflyfishes (pisces:chaetodontidae) at Orpheus Island. Unpublished doctoral dissertation, James Cook University, Townsville.

Larcombe, J. W. P. (1990). A comparison of the coral communities of Pioneer Bay and North-East Reef, Orpheus Island. Unpublished doctoral dissertation, James Cook University, Townsville.

1989

Lucas, J.S., Nash, W.J., Crawford, C.M., Braley, R.D. (1989). Environmental influences on growth and survival during the ocean-nursery rearing of giant clams, Tridacna gigas (L.). Aquaculture, ISSN 0044-8486, 1989, Volume 80, Issue 1, pp. 45-61

1988

Cumming, L. (1988). Reproductive biology and population dynamics of Pyrgiscus sp: A Pryamidellid ectoparasite of cultured Tridacna gigas at Orpheus Island, QueenslandUnpublished doctoral dissertation. James Cook University, Townsville.

O’Keeffe, M. J. (1988). The underworld of Orpheus: Palaeogeography and potential archaeology of the Herbert/Burdekin Region of the North Queensland continental shelf.Unpublished doctoral dissertation. James Cook University, Townsville.

1987

Johnson, D.P. & Risk, M. J. (1987). Fringing reef growth on a terrigenous mud foundation, Fantome Island, central Great Barrier Reef, Australia. Sedimentology (34) pp. 275-287

1986

Parnell, K.E. (1986). Water movement within a fringing reef flat, Orpheus Island, North Queensland, Australia. Coral Reefs (5) 1, DOI: 10.1007/BF00302164

1985

Barnes, R. D. (1984). Morphogenesis of a nearshore windward fringing reef, Orpheus island. Unpublished honours dissertation, James Cook University, Townsville.

Bellwood , D. R. (1985). The functional morphology, systematics and behavioural ecology of parrotfishes (family Scaridae). Unpublished honours dissertation, James Cook University, Townsville.

1984

Barnes, R.D. (1984). Morphogenesis of a nearshore windward fringing reef, Orpheus island. Unpublished honours dissertation, James Cook University, Townsville.

1981

Slocombe, A.M. (1981). The structure and development of the fringing reef in Pioneer Bay, Orpheus Island. Unpublished doctoral dissertation, James Cook University, Townsville.