Featured News Finding Nemo’s family: a good home is more important than good genes

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Thu, 28 Nov 2019

Finding Nemo’s family: a good home is more important than good genes

Clown fish
Clownfish (Amphiprion percula) coming out of their anemone to greet scientific divers, or more likely to defend their habitat. Image: Morgan Bennett-Smith (KAUST)

In a world-first study, scientists find the long-term success of the clownfish has very little to do with good genes but instead depends on whether they’re born into and are living in the best places.

The natural home of the clownfish is the anemone, but not all anemones are equal. Study co-author Professor Geoff Jones, from the ARC Centre of Excellence for Coral Reef Studies at James Cook University (Coral CoE at JCU), says the reproductive success of the clownfish depends almost entirely on having a high-quality anemone home.

“For a clownfish, it’s not ‘who’ you are, but ‘where’ you are that matters for your future reproductive success,” Prof Jones said.

“In terms of their genes, clownfish are as good as they can be at finding a suitable habitat. The rest comes down to luck—of being in the right place at the right time.”

“The success of big families that extend over many generations is linked to high-quality habitats, not their shared genes.”

The quantitative genetic study comprises ten years of research on the coral reefs of Papua New Guinea. Family trees were established for the entire clownfish population at an island in Kimbe Bay, a well-known biodiversity hot spot. The team of scientists identified each fish individually and sampled its DNA to establish who was related to whom over five successive generations.

After constructing Kimbe Island’s clownfish family tree, the researchers were able to assess the ability of the population to persist and the genetic potential to adapt to increasingly rapid environmental change. Unfortunately, the potential is almost nil.

“There are no particular genetic variants that contribute more offspring to the next generation. The quality of the host anemone contributes most to the ability of the clownfish to renew its population,” Prof Jones said.

The scientists say that if high-quality anemones remain healthy, this will ensure the clownfish population can persist.

However, anemones, and coral reefs in general, are under direct threat from the impacts of climate change.

In increasingly warming waters, corals are more susceptible to bleaching. The process is the same for anemones — their symbiotic algae leave when under stress. If they stay away long enough then the anemone starves to death, killing the fish’s home at the same time.

The study is the first of its kind to evaluate the genetic capacity of a natural marine population to adapt to environmental change. This has been largely the domain of evolutionary studies of terrestrial species.

It is not surprising that intergenerational relationships in marine population had yet to be sampled, according to co-author Dr Benoit Pujol, an evolutionary biologist from France’s National Centre of Scientific Research (CNRS).

“Working out who is related to who in the marine environment is extremely challenging,” Dr Pujol said.

“Long-term genetic datasets for individuals within a marine population are incredibly rare. Until now, we just haven’t had the data required to answer this question.”

“But now that we have it, we find that Nemo is at the mercy of a habitat that is degrading more and more every year,” added co-author Dr Serge Planes, a Director of Research at France’s National Centre of Scientific Research (CNRS).

“To expect a clownfish to genetically adapt at a pace which would allow it to persist is unreasonable,” he said.

“Their future depends on our ability to maintain the quality of their habitat,” the authors conclude.

The international team was led by France’s CNRS (CRIOBE USR3278 PSL University Paris : EPHE-UPVD-CNRS) in collaboration with researchers from Australia (Coral CoE at JCU), the United States (WHOI), Saudi Arabia (KAUST) and Chile (Universidad Austral de Chile).


Salles O, Almany G, Berumen M, Jones G, Saenz-Agudelo P, Srinivasan M, Thorrold S, Pujol B, Planes S (2019). Ecology Letters. 'Strong habitat and weak genetic effects shape the lifetime reproductive success in a wild clownfish population'.


  1. Clownfish (Amphiprion percula) on their anemone in the lagoon around Kimbe Island in Papua New Guinea. Photo credit: Simon Thorrold (WHOI)
  2. Clownfish (Amphiprion percula) coming out of their anemone to greet scientific divers, or more likely to defend their habitat. Photo credit: Morgan Bennett-Smith (KAUST)

Professor Geoffrey Jones
E: geoffrey.jones@jcu.edu.au |

Dr Benoit Pujol (National Centre of Scientific Research, France)
E:  benoit.pujol@univ-perp.fr