Publications

R. Marcoli , D.B. Jones, C. Massault, A.F. Marc b, M. Moran, P.J. Harrison , H.S. Cate, A.L. Lopata, D.R. Jerry The skin structure in multiple color variants of barramundi (Lates calcarifer): A histological, immunohistochemical and ultrastructural overview Aquaculture Volume 576, 15 November 2023, 739859

Alzayat Saleh,  Marcus Sheaves, Dean Jerry,  Mostafa Rahimi Azghadi  Applications of deep learning in fish habitat monitoring: A tutorial and survey.  Expert Systems with Applications Volume 238, Part B, 15 March 2024, 121841

Alzayat Saleh,  Dean Jerry,  Mostafa Rahimi Azghadi  MFLD-net: a lightweight deep learning network for fish morphometry using landmark detection.  Aquatic Ecology, Volume 57 pages 913-931, 08 July 2023

Lim, J.Y., Yeoh, Y.K., Canepa, M. et al. The early life microbiome of giant grouper (Epinephelus lanceolatus) larvae in a commercial hatchery is influenced by microorganisms in feed. Animal Microbiome 6, 51 (2024). https://doi.org/10.1186/s42523-024-00339-y

Weiyu Chen, Dean R. Jerry, Ronald D. White, Leo Nankervis. Non-Invasive Prediction of Barramundi (Lates calcarifer) Flesh Lightness Using Near-Infrared Spectroscopy. Aquaculture Research 15 October 2024 https://doi.org/10.1155/2024/1524148

Emily M. Jerry, Shaymaviswanathan Karnaneedi,Thimo Ruethers, Dean R. Jerry, Kelly Condon and Andreas L. Lopata.  Allergen Diversity and Abundance in Different Tissues of the Redclaw Crayfish (Cherax quadricarinatus). MDPI - Foods, Volume 13, Issue 2 (13020315)

Saleh A, Hasan M, Raadsma H, Khatkar M, Jerry D and Rahimi Azghadi M (2024) Prawn Morphometrics and Weight Estimation from Images using Deep Learning for Landmark Localization. Aquacultural Engineering,

Marc A, Guppy J, Goldsbury J, Rudd D, Cate H, Paris D and Jerry D (2024) Characterization of sperm quality in captive-bred barramundi (Lates calcarifer): Effect on spawning performance and paternal contribution in mass-spawning events.Aquaculture, 585.

R. Marcoli, D.B. Jones,  C. Massault, M. Moran, P.J. Harrison, H.S. Cate, D.R. Jerry Revealing the genetic and molecular drivers behind golden and platinum coloration in barramundi (Lates calcarifer) Aquaculture  Volume 586  , 30 May 2024, 740820

Megan N. Moran, D. B. Jones, S. A. Jensen, R. Marcoli, D. R. Jerry Optimising commercial traits through gene editing in aquaculture: Strategies for accelerating genetic improvement Reviews in Aquaculture 6 December 2023

Alzayat Saleh,Marcus Sheaves, Dean Jerry, Mostafa Rahimi Azghadi.  Adaptive deep learning framework for robust unsupervised underwater image enhancement. Expert Systems with Applications Volume 268, 5 April 2025, 126314

Anna Wilson, Jessica E. Harris, Rocky de Nys, Dean R.Jerry. Insights into the molecular and morphological diversity of Asparagopsis taxiformis in north-eastern Australia. Algal Research Volume 90, August 2025, 104182

Roni Chandra Mondal, Jarrod L. Guppy, Maria A. Villacis-Escobar, Dean R. Jerry. Beyond the Binary: Controlling Natural Sex-Change in Hermaphroditic Fishes. Reviews in Aquaculture Volum 17, issue 4 September 2025

Emily Rhodes, Dean Jerry, David B. Jones, Julie Goldsbury, & Nga Vu.  Swift SNPs: Evaluating Rapid DNA Extraction Methods for Scalable Genotyping in Aquaculture. Marine Biotechnology Volume 28, 9 January 2026, article number 15

Roberta Marcoli, D. B. Jones, C. Massault, M. Moran, P. J. Harrison, H. S. Cate, D. R. Jerry  Correlation between DNA methylation and transcriptomic changes in golden Asian sea bass (Lates calcarifer): An integrated approach
Journal of Fish Biology 29 January 2026 https://doi.org/10.1111/jfb.70325

Nga T.T. Vu, David B. Jones, Cecile Massault, Kyall R. Zenger, Ira Cooke, Dean R. Jerry. Tracking family contributions and family-level survival in silver-lipped pearl oyster Pinctada maxima: Unlocking cost-effective strategies for selective breeding Aquaculture Volume 615, 15 March 2026, 743560

Varsha V. Balu, Dean R. Jerry, Andreas L. Lopata. Proteomic Insights into the Immune and Sex-Specific Proteins in the Skin Mucus of Barramundi (Lates calcarifer). Proteomes Volume 14(1), 20 March 2026, 15.

Jessica Hintzsche, Lorenzo Vincenzo Bertola, David B. Jones, Christie Warburton, Owen Powell, Elizabeth M. Ross, Paul Harrison, Holly Cate, Dean R. Jerry, Ben J. Hayes, Kyall R. Zenger.
Genetic linkage map of the Australian barramundi (Lates calcarifer) reveals potential to leverage extreme sex-specific recombination and sequential hermaphroditism for ultimate breeding program control. Research Square (preprint). https://doi.org/10.21203/rs.3.rs-8400904/v1

Ngoc-Tran T. Nguyen, Junya Minami,  Maria Andrade Martinez, Richard M. Knuckey, Kyall R. Zenger, Dean R. Jerry, 
Kelly Condon .Red-spotted Grouper Nervous Necrosis Virus (RGNNV) detection in giant grouper (Epinephelus lanceolatus) using destructive and non-destructive samples is influenced by infectious dose, challenge route, and infection outcome Aquaculture Volume 623, 15 August 2026, 744129