CTBMB Publications

Health and Disease

Field M, Burgio G, Chuah A, Al Shekaili J, Hassan B, Al Sukaiti N, Foote S, Cook M and Andrews D (2019) Recurrent miscalling of missense variation from short-read genome sequence data. BMC Genomics, 20 (Suppl 8).

Law S, Haigh O, Walpole C, Colm K, Miles J, Ghandi M, Radford K and Steptoe R (2019) Simple, rapid and inexpensive typing of common HLA class I alleles for immunological studies. Journal of Immunological Methods, 465. pp. 72-76

Jiang S, Athanasopoulos V, Ellyard J, Chuah A, Cappello J, Cook A, Prabhu S, Cardenas J, Gu J, Stanley M, Roco J, Papa I, Yabas M, Walters G, Burgio G, McKeon K, Byers J, Burrin C, Enders A, Miosge L, Canete P, Jelusic M, Tasic V, Lungu A, Alexander S, Kitching A, Fulcher D, Shen N, Arsov T, Gatenby P, Babon J, Mallon D, de Lucas Collantes C, Stone E, Wu P, Field M, Andrews T, Cho E, Pascual V, Cook M and Vinuesa C (2019) Functional rare and low frequency variants in BLK and BANK1 contribute to human lupus. Nature Communications, 10.

Cooper M, Loiseau C, McCarthy J and Doolan D (2019) Human challenge models: tools to accelerate the development of malaria vaccines. Expert Review of Vaccines, 18 (3). pp. 241-251

Tropical Biodiversity

Ying, H., Hayward, D. C., Cooke, I., Wang, W., Moya, A., Siemering, K. R., ... & Miller, D. J. (2019). The whole genome sequence of the coral Acropora millepora. Genome biology and evolution.

Kuhn, D. N., Dillon, N., Bally, I., Groh, A., Rahaman, J., Warschefsky, E., Freeman, B., Innes, D. and Chambers, A. H. (2019) Estimation of genetic diversity and relatedness in a mango germplasm collection using SNP markers and a simplified visual analysis method. Scientia Horticulturae, 252 . pp. 156-168. ISSN 0304-4238

Methods & Pipeline Development

Thang, M. W., Chua, X. Y., Price, G., Gorse, D., & Field, M. A. (2019). MetaDEGalaxy: Galaxy workflow for differential abundance analysis of 16s metagenomic data. F1000Research, 8.

Cooke, I., Mead, O., Whalen, C., Boote, C., Moya, A., Ying, H., ... & Voolstra, C. R. (2019). Molecular techniques and their limitations shape our view of the holobiont. Zoology, 125695.

Gan, H. M., Tan, M. H., Austin, C. M., Sherman, C., Wong, Y. T., Strugnell, J., ... & Miller, A. (2019). Best foot forward: Nanopore long reads, hybrid meta-assembly and haplotig purging optimises the first genome assembly for the Southern Hemisphere blacklip abalone (Haliotis rubra).Frontiers in genetics, 10, 889.

McKnight, D. T., Huerlimann, R., Bower, D. S., Schwarzkopf, L., Alford, R. A., & Zenger, K. R. (2019). Methods for normalizing microbiome data: An ecological perspective. Methods in Ecology and Evolution, 10(3), 389-400.

Tropical Food Production

Nowland, S. J., Silva, C. N., Southgate, P. C., & Strugnell, J. M. (2019). Mitochondrial and nuclear genetic analyses of the tropical black-lip rock oyster (Saccostrea echinata) reveals population subdivision and informs sustainable aquaculture development.BMC genomics, 20(1), 711.

Hua, K., Cobcroft, J. M., Cole, A., Condon, K., Jerry, D. R., Mangott, A., ... & Strugnell, J. M. (2019). The Future of Aquatic Protein: Implications for Protein Sources in Aquaculture Diets. One Earth, 1(3), 316-329.

Infante-Villamil, S., Huerlimann, R., Condon, K., Maes, G. E., & Jerry, D. R. (2019). Bacterial signatures of productivity decay in Penaeus monodon ponds infected with PirA toxin. Aquaculture, 734202.