Publications

Arbon P, Condon K, Andrade Martinez M and Jerry D (2022) Molecular detection of six viral pathogens from Australian wild sourced giant black tiger shrimp (Penaeus monodon) broodstock. Aquaculture, 548.

Aquino J, Elliott L, Zeng C and Paris D (2022) Recent developments in male fertility evaluation, sperm cryopreservation and artificial fertilisation, and their potential application to decapod crustacean aquaculture. Reviews in Aquaculture, 14 (2). pp. 848-889

Budd A, Guppy J, Thepot V, Domingos J and Jerry D (2022) Delayed effect of low rearing temperature on gonadal DNA methylation in juvenile barramundi (Lates calcarifer). Aquaculture, 560.

Budd A, Robins J, Whybird O and Jerry D (2022) Epigenetics underpins phenotypic plasticity of protandrous sex change in fish. Ecology and Evolution, 12 (3).

Baje L, Chin A, White W and Simpfendorfer C (2022) Dietary overlap of carcharhinid sharks in the Gulf of Papua. Marine and Freshwater Research, 73 (5). pp. 605-614

Bouyoucos I, Simpfendorfer C, Planes S, Schwieterman G, Weideli O and Rummer J (2022) Thermally insensitive physiological performance allows neonatal sharks to use coastal habitats as nursery areas. Marine Ecology Progress Series, 682. pp. 137-152

Chen J, Zeng C and Cobcroft J (2022) Digestive system ontogeny and the effects of weaning time on larval survival, growth and pigmentation development of orchid dottyback Pseudochromis fridmani. Aquaculture, 549.

Chin A, Molloy F, Cameron D, Day J, Cramp J, Gerhardt K, Heupel M, Read M and Simpfendorfer C (2022) Conceptual frameworks and key questions for assessing the contribution of marine protected areas to shark and ray conservation. Conservation Biology, 37 (1).

Condon K, Huerlimann R, Charles T, Lowrey R, Arbon P and Jerry D (2022) Using bacterial whole genome sequencing to identify toxin genes associated with disease outbreaks in black tiger shrimp (Penaeus monodon) aquaculture production. Aquaculture, 546.

Cooper M, Villacorta-Rath C, Burrows D, Jerry D, Carr L, Barnett A, Huveneers C and Simpfendorfer C (2022) Practical eDNA sampling methods inferred from particle size distribution and comparison of capture techniques for a Critically Endangered elasmobranch. Environmental DNA, 4 (5). pp. 1011-1023

D'Alberto B, White W, Chin A, Dharmadi and Simpfendorfer C (2022) Untangling the Indonesian tangle net fishery: Describing a data-poor fishery targeting large, threatened rays (Superorder Batoidea). Aquatic Conservation: marine and freshwater ecosystems, 32 (2). pp. 366-384

Diedrich A, Duce S, Eriksson H, Govan H, Harohau D, Koczberski G, Lau J, Mills D, Minter T, Steenbergen D and Troell M (2022) An applied research agenda for navigating diverse livelihood challenges in rural coastal communities in the tropics. One Earth, 5 (11). pp. 1205-1215

Free C, Cabral R, Froehlich H, Battista W, Ojea E, O’Reilly E, Palardy J, García Molinos J, Siegel K, Arnason R, Juinio-Meñez M, Fabricius K, Turley C and Gaines S (2022) Expanding ocean food production under climate change. Nature, 605. pp. 490-496

Genodepa J, Zeng C, Militz T and Southgate P (2022) Influence of Food Density on Digestive Enzyme Activities in Newly Hatched Larvae of the Spiny Lobster, Panulirus ornatus. Journal of Shellfish Research, 41 (3). pp. 381-387

Genodepa J, Zeng C, Militz T and Southgate P (2022) Ontogenetic variation in digestive enzyme activities within embryos and newly-hatched larvae of the tropical spiny lobster, Panulirus ornatus. Aquaculture, 548 (Part 1).

Genodepa J, Zeng C, Militz T and Southgate P (2022) Responses of digestive enzyme profiles to various scenarios of food availability in newly-hatched Stage I phyllosoma larvae of the tropical spiny lobster Panulirus ornatus. Comparative Biochemistry and Physiology-Part B: biochemistry & molecular biology, 261.

Gong J, Huang C, Yu K, Li S, Zeng C and Ye H (2022) The effects of feeding ration and cheliped autotomy on the growth and expression of ecdysteroid receptor in early juvenile mud crabs, Scylla paramamosain. Aquaculture Reports, 25.

Guppy J, Marc A and Jerry D (2022) Maturation and spawning performance of hormonally-induced precocious female barramundi (Lates calcarifer) and implications of their use in selective breeding. Aquaculture, 552.

Hasan M, Raadsma H, Thomson P, Wade N, Jerry D and Khatkar M (2022) Genetic parameters of color phenotypes of black tiger shrimp (Penaeus monodon). Frontiers in Genetics, 13.

Huerlimann R, Cowley J, Wade N, Wang Y, Kasinadhuni N, Chan C, Jabbari J, Siemering K, Gordon L, Tinning M, Montenegro J, Maes G, Sellars M, Coman G, McWilliam S, Zenger K, Khatkar M, Raadsma H, Donovan D, Krishna G and Jerry D (2022) Genome assembly of the Australian black tiger shrimp (Penaeus monodon) reveals a novel fragmented IHHNV EVE sequence. G3: Genes, Genomes, Genetics, 12 (4).

Hari K, Jaiteh V and Chin A (2022) The sharks and rays of Palau: Biological diversity, status, and social and cultural dimensions. Pacific Conservation Biology, 28 (5). pp. 398-413

Hoel K, Chin A and Lau J (2022) Clashing conservation values: The social complexities of shark depredation. Biological Conservation, 272.

Jerry D, Jones D, Lillehammer M, Massault C, Loughnan S, Cate H, Harrison P, Strugnell J, Zenger K and Robinson N (2022) Predicted strong genetic gains from the application of genomic selection to improve growth related traits in barramundi (Lates calcarifer). Aquaculture, 549

Jog K, Sutaria D, Diedrich A, Grech A and Marsh H (2022) Marine Mammal Interactions With Fisheries: Review of Research and Management Trends Across Commercial and Small-Scale Fisheries. Frontiers in Marine Science, 9.

Li J, Nankervis L and Dawson A (2022) Digesting the Indigestible: Microplastic Extraction from Prawn Digestive Tracts. Frontiers in Environmental Chemistry, 3.

Liyanage D, Lee S, Yang H, Lim C, Omeka W, Sandamalika W, Udayantha H, Kim G, Ganeshalingam S, Jeong T, Oh S, Won S, Koh H, Kim M, Jones D, Massault C, Jerry D and Lee J (2022) Genome-wide association study of VHSV-resistance trait in Paralichthys olivaceus. Fish and Shellfish Immunology, 124. pp. 391-400

Martins A, Matley J, Heupel M, Fisk A, Chin A and Simpfendorfer C (2022) Trophic ecology of sympatric juvenile stingrays within a nursery area. Marine and Freshwater Research, 73 (5). pp. 676-686

Massault C, Jeffrey C, Jones D, Barnard R, Strugnell J, Zenger K and Jerry D (2022) Non-invasive DNA collection for parentage analysis for bivalves: A case study from the silver-lipped pearl oyster (Pinctada maxima). Aquaculture, 552.

Nankervis L, Cobcroft J, Nguyen N and Rimmer M (2022) Advances in practical feed formulation and adoption for hybrid grouper (Epinephelus fuscoguttatus ♀ × E. lanceolatus ♂) aquaculture. Reviews in Aquaculture, 14 (1). pp. 288-307

Omeka W, Liyanage D, Lee S, Lim C, Yang H, Sandamalika W, Udayantha H, Kim G, Ganeshalingam S, Jeong T, Oh S, Won S, Koh H, Kim M, Jones D, Massault C, Jerry D and Lee J (2022) Genome-wide association study (GWAS) of growth traits in olive flounder (Paralichthys olivaceus). Aquaculture, 555.

Penglase S, Ackery T, Kitchen B, Flavel M and Condon K (2022) The Effects of a Natural Polyphenol Extract from Sugarcane (Saccharum officinarum) on the Growth, Survival, and Feed Conversion Efficiency of Juvenile Black Tiger Shrimp (Penaeus monodon). Applied Sciences, 12 (16).

Strugnell J, Mcgregor H, Wilson N, Meredith K, Chown S, Lau S, Robinson S and Saunders K (2022) Emerging biological archives can reveal ecological and climatic change in Antarctica. Global Change Biology, 28 (22). pp. 6483-6508

Villacorta Rath C, Green B, Gardner C, Murphy N, Souza C and Strugnell J (2022) Disentangling genetic from environmental effects on phenotypic variability of Southern rock lobster (Jasus edwardsii) postlarvae. Ecology and Evolution, 12 (11).

Wheeler C, Kneebone J, Heinrich D, Strugnell J, Mandelman J and Rummer J (2022) Diel Rhythm and Thermal Independence of Metabolic Rate in a Benthic Shark. Journal of Biological Rhythms, 37 (5). pp. 484-497

Whitelaw B, Jones D, Guppy J, Morse P, Strugnell J, Cooke I and Zenger K (2022) High-Density Genetic Linkage Map of the Southern Blue-ringed Octopus (Octopodidae: Hapalochlaena maculosa). Diversity, 14 (12).

Xu T and Zeng C (2022) Establishing larval feeding regimens for the decorator crab Camposcia retusa: effects of live prey types and density on larval survival and development. Aquaculture Research, 53 (7). pp. 2772-2784

Zhang J, Richards Z, Adam A, Chan C, Shinzato C, Gilmour J, Thomas L, Strugnell J, Miller D and Cooke I (2022) Evolutionary Responses of a Reef-building Coral to Climate Change at the End of the Last Glacial Maximum. Molecular Biology and Evolution, 39 (10).

Bassett, Hannah R., Lau, Jacqueline, Giordano, Christopher, Suri, Sharon, Advani, Sahir, and Sharan, Sonia (2021) Preliminary lessons from COVID-19 disruptions of small-scale fishery supply chains. World Development, 143. 105473.

Azzali, Simona, and Thirumaran, K. (2021) A tropical agenda for future research. In: Azzali, Simona, and Thirumaran, K., (eds.) Tropical Constrained Environments and Sustainable Adaptations. Managing the Asian Century . Springer Nature, Singapore, pp. 243-247.

Banh, Quyen Q. T., Guppy, Jarrod L., Domingos, Jose A., Budd, Alyssa M., Pinto, Ricardo C. C., Marc, Adrien F., and Jerry, Dean R. (2021) Induction of precocious females in the protandrous barramundi (Lates calcarifer) through implants containing 17β-estradiol - effects on gonadal morphology, gene expression and DNA methylation of key sex genes. Aquaculture. 736601. (In Press)

Banh, Quyen Q.T., Domingos, Jose A., Pinto, Ricardo C.C., Nguyen, Kien T., and Jerry, Dean R. (2021) Dietary 17 β‐oestradiol and 17 α‐ethinyloestradiol alter gonadal morphology and gene expression of the two sex‐related genes, dmrt1 and cyp19a1a , in juvenile barramundi ( Lates calcarifer Bloch). Aquaculture Research. (In Press)

Bolte, Brett, Goldsbury, Julie, Huerlimann, Roger, Jerry, Dean, and Kingsford, Mike (2021) Validation of eDNA as a viable method of detection for dangerous cubozoan jellyfish. Environmental DNA, 3 (4). pp. 769-779.

Candebat, Caroline L., Booth, Mark A., and Pirozzi, Igor (2021) The sulfur amino acid requirements of juvenile Yellowtail Kingfish (Seriola lalandi). Aquaculture, 534. 736234.

Chen, Jun Yu, and Zeng, Chaoshu (2021) Transition to Artemia feeding phase for orchid dottyback Pseudochromis fridmani larvae: establishing suitable prey shift time and strategy. Aquaculture, 545. 737180.

Chen, Jun Yu, and Zeng, Chaoshu (2021) The effects of live prey and greenwater on the early larval rearing of orchid dottyback Pseudochromis fridmani. Aquaculture, 543. 737008.

Domingos, Jose A., Shen, Xueyan, Terence, Celestine, Senapin, Saengchan, Dong, Ha Thanh, Tan, Marie R., Gibson-Kueh, Susan, and Jerry, Dean R. (2021) Scale Drop Disease Virus (SDDV) and Lates calcarifer Herpes Virus (LCHV) coinfection downregulate immune-relevant pathways and cause splenic and kidney necrosis in barramundi under commercial farming conditions. Frontiers in Genetics, 12. 666897.

Drane, Kezia, Huerlimann, Roger, Power, Michelle, Whelan, Anna, Ariel, Ellen, Sheehan, Madoc, and Kinobe, Robert (2021) Testudines as sentinels for monitoring the dissemination of antibiotic resistance in marine environments: an integrative review. Antibiotics, 10 (7). 775.

Emmons, Sophia M., D'Alberto, Brooke M., Smart, Jonathan J., and Simpfendorfer, Colin A. (2021) Age and growth of tiger shark (Galeocerdo cuvier) from Western Australia. Marine and Freshwater Research, 72 (7). pp. 950-963.

Gabela-Flores, María Virginia, and Diedrich, Amy (2021) Exploring leadership dynamics in community-based marine protected areas. Marine Policy, 129. 104569.

Gibbs, Mark T., Gibbs, Bridget L., Newlands, Maxine, and Ivey, Jordan (2021) Scaling up the global reef restoration activity: avoiding ecological imperialism and ongoing colonialism. PLoS ONE, 16 (5). e0250870.

Grantham, Ruby, Álvarez-Romero, Jorge G., Mills, David J., Rojas, Cristian, and Cumming, Graeme S. (2021) Spatiotemporal determinants of seasonal gleaning. People and Nature, 3 (2). pp. 376-390.

Infante Villamil, Sandra, Huerlimann, Roger, and Jerry, Dean R. (2021) Microbiome diversity and dysbiosis in aquaculture. Reviews in Aquaculture. (In Press)

Jarvis, Diane, Maclean, Kirsten, and Woodward, Emma (2021) The Australian Indigenous-led bush products sector: insights from the literature and recommendations for the future. Ambio. (In Press)

Karnaneedi, Shaymaviswanathan, Huerlimann, Roger, Johnston, Elecia B., Nugraha, Roni, Ruethers, Thimo, Taki, Aya C., Kamath, Sandip D., Wade, Nicholas M., Jerry, Dean R., and Lopata, Andreas L. (2021) Novel allergen discovery through comprehensive de novo transcriptomic analyses of five shrimp species. International Journal of Molecular Sciences, 22 (1). 32.

Katovai, Eric, Katovai, Dawnie D., and Laurance, William F. (2021) Potential restoration approaches for heavily-logged tropical forests in the Solomon Islands. In: Roberts, John Laing, Nath, Shyam, Paul, Satya, and Madhoo, Yeti Nisha, (eds.) Shaping the Future of Small Islands: Roadmap for Sustainable Development. Springer, Cham, Switzerland, pp. 219-232.

Laradji, Issam H., Saleh, Alzayat, Rodriguez, Pau, Nowrouzezahrai, Derek, Rahimi Azghadi, Mostafa, and Vazquez, David (2021) Weakly supervised underwater fish segmentation using affinity LCFCN. Scientific Reports, 11. p. 17379.

MacKeracher, Tracy, Mizrahi, Me'ira, Bergseth, Brock, Chit Maung, Khin May, Khine, Zin Lin, Phyu, Ei Thal, Simpfendorfer, Colin A., and Diedrich, Amy (2021) Understanding non-compliance in small-scale fisheries: shark fishing in Myanmar's Myeik Archipelago. Ambio, 50. pp. 572-585.

Martins, A.P.B., Heupel, M.R., Bierwagen, S.L., Chin, A., and Simpfendorfer, C.A. (2021) Tidal-diel patterns of movement, activity and habitat use by juvenile mangrove whiprays using towed-float GPS telemetry. Marine and Freshwater Research, 72. pp. 534-541.

McKenzie, Len, Yoshida, Rudi L., Aini, John W., Andrefouet, Serge, Colin, Patrick L., Cullen-unsworth, Leanne C., Hughes, Alec T., Payri, Claude E., Rota, Manibua, Shaw, Christina, Skelton, Posa A., Tsuda, Roy T., Vuki, Veikila C., and Unsworth, Richard K.F. (2021) Seagrass ecosystems of the Pacific Island countries and territories: a global bright spot. Marine Pollution Bulletin, 167. 112308.

McKenzie, Len J., Yoshida, Rudi L., Aini, John W., Andrefouet, Serge, Colin, Patrick L., Cullen-unsworth, Leanne C., Hughes, Alec T., Payri, Claude E., Rota, Manibua, Shaw, Christina, Tsuda, Roy T., Vuki, Veikila C., and Unsworth, Richard K.F. (2021) Seagrass ecosystem contributions to people's quality of life in the Pacific Island Countries and Territories. Marine Pollution Bulletin, 167. 112307.

McNiven, Ian J., and Lambrides, Ariana B.J. (2021) Stone-walled fish traps of Australia and New Guinea as expressions of enhanced sociality. In: David, Bruno, and McNiven, Ian J., (eds.) The Oxford Handbook of the Archaeology of Indigenous Australia and New Guinea. Oxford University Press, Melbourne, VIC, Australia.

Orbán, László, Shen, Xueyan, Phua, Norman, and Varga, László (2021) Toward genome-based selection in Asian seabass: what can we learn from other food fishes and farm animals? Frontiers in Genetics, 12. 506754.

Pacoureau, Nathan, Rigby, Cassandra L., Kyne, Peter M., Sherley, Richard B., Winker, Henning, Carlson, John K., Fordham, Sonja V., Barreto, Rodrigo, Fernando, Daniel, Francis, Malcolm P., Jabado, Rima W., Herman, Katelyn B., Liu, Kwang-Ming, Marshall, Andrea D., Pollom, Riley A., Romanov, Evgeny V., Simpfendorfer, Colin A., Yin, Jamie S., Kindsvater, Holly K., and Dulvy, Nicholas K. (2021) Half a century of global decline in oceanic sharks and rays. Nature, 589. pp. 567-571.

Pewan, Shedrach Benjamin, Otto, John Roger, Huerlimann, Roger, Budd, Alyssa Marie, Mwangi, Felista Waithira, Edmunds, Richard Crawford, Holman, Benjamin William Behrens, Henry, Michelle Lauren Elizabeth, Kinobe, Robert Tumwesigye, Adegboye, Oyelola Abdulwasiu, and Malau-Aduli, Aduli Enoch Othniel (2021) Next generation sequencing of single nucleotide polymorphic DNA-markers in selecting for intramuscular fat, fat melting point, omega-3 long-chain polyunsaturated fatty acids and meat eating quality in Tattykeel Australian White MARGRA lamb. Foods, 10 (10). 2288.

Sheaves, M., Waltham, N.J., Benham, C., Bradley, M., Mattone, C., Diedrich, A., Sheaves, J., Sheaves, A., Hernandez, S., Dale, P., Banhalmi-Zakar, Z., and Newlands, M. (2021) Restoration of marine ecosystems: understanding possible futures for optimal outcomes. Science of the Total Environment, 796. 148845.

Silva, Catarina N.S., Murphy, Nicholas P., Bell, James J., Green, Bridget S,, Duhamel, Guy, Cockcroft, Andrew C., Hernández, Cristián E., and Strugnell, Jan M. (2021) Global drivers of recent diversification in a marine species complex. Molecular Ecology. (In Press)

Spijkers, Jessica, Merrie, Andrew, Wabnitz, Colette C.C., Osborne, Matthew, Mobjörk, Malin, Bodin, Örjan, Selig, Elizabeth R., Le Billon, Philippe, Hendrix, Cullen S., Singh, Gerald G., Keys, Patrick W., and Morrison, Tiffany H. (2021) Exploring the future of fishery conflict through narrative scenarios. One Earth, 4. pp. 386-396.

Spijkers, Jessica, Singh, Gerald G., Wabnitz, Colette C.C., Österblom, Henrik, Cumming, Graeme S., and Morrison, Tiffany H. (2021) Identifying predictors of international fisheries conflict. Fish and Fisheries, 22 (4). pp. 834-850.

Terence, Celestine, Domingos, Jose A., Angelo Uichanco, Joseph, Monteil, Yann, Monteil, Loïc, De Braux, Emmanuel, Banh, Quyen Q.T., Gibson-Kueh, Susan, and Jerry, Dean R. (2021) Early sex change of barramundi Lates calcarifer farmed in Singapore. Aquaculture Reports, 20. 100712.

Thirumaran, K., and Azzali, Simona (2021) Adapting to constraints: businesses and societies in the Tropics. In: Azzali, Simona, and Thirumaran, K., (eds.) Tropical Constrained Environments and Sustainable Adaptations. Managing the Asian Century . Springer Nature, Singapore, pp. 1-5.

Tsang, Hin Hung, Domingos, Jose A., Westaway, Jacob A.F., Kam, Maximilian H.Y., Huerlimann, Roger, and Bastos Gomes, Giana (2021) Digital droplet PCR-based environmental DNA tool for monitoring Cryptocaryon irritans in a marine fish farm from Hong Kong. Diversity, 13 (8). 350.

Villacorta-Rath, Cecilia, Hoskin, Conrad J., Strugnell, Jan M., and Burrows, Damien (2021) Long distance (>20 km) downstream detection of endangered stream frogs suggests an important role for eDNA in surveying for remnant amphibian populations. PeerJ, 9. e12013.

Waltham, Nathan J., Wegscheidl, Carla, Volders, Adrian, Smart, James C.R., Hasan, Syezlin, Ledee, Elodie, and Waterhouse, Jane (2021) Land use conversion to improve water quality in high DIN risk, low-lying sugarcane areas of the Great Barrier Reef catchments. Marine Pollution Bulletin, 167. 112373.

Álvarez-Romero, Jorge, Kiatkoski Kim, Milena, Buissereth, Rachel, Pressey, Robert L., Panell, David, Douglas, Michael M., and Spencer-Cotton, Alaya (2021) Looking back to look forward: a timeline of the Fitzroy River catchment. Report to the Australian Department of Agriculture, Water and the Environment. Report. James Cook University, Townsville, QLD, Australia.

Zu Ermgassen, Philine S. E., Thurstan, Ruth H., Corrales, Jorge, Alleway, Heidi, Carranza, Alvar, Dankers, Norbert, DeAngelis, Bryan, Hancock, Boze, Kent, Flora, McLeod, Ian, Pogoda, Bernadette, Liu, Qing, and Sanderson, William G. (2020) The benefits of bivalve reef restoration: a global synthesis of underrepresented species. Aquatic Conservation: Marine and Freshwater Ecosystems, 30 (11). pp. 2050-2065.

Worthington, Thomas A., Andradi-Brown, Dominic A., Bhargava, Radhika, Buelow, Christina, Bunting, Pete, Duncan, Clare, Fatoyinbo, Lola, Friess, Daniel A., Goldberg, Liza, Hilarides, Lammert, Lagomasino, David, Landis, Emily, Longley-Wood, Kate, Lovelock, Catherine E., Murray, Nicholas J., Narayan, Siddharth, Rosenqvist, Ake, Sievers, Michael, Simard, Marc, Thomas, Nathan, van Eijk, Pieter, Zganjar, Chris, and Spalding, Mark D. (2020) Harnessing big data to support the conservation and rehabilitation of mangrove forests globally. One Earth, 2 (5). pp. 429-443.

Allan, Bridie J.M., Illing, Björn, Fakan, Eric P., Narvaez, Pauline, Grutter, Alexandra S., Sikkel, Paul C., McClure, Eva C., Rummer, Jodie L., and McCormick, Mark (2020) Parasite infection directly impacts escape response and stress levels in fish. Journal of Experimental Biology, 223 (16). jeb230904.

Andrews, Kimberly R., Copus, Joshua M., Wilcox, Christie, Williams, Ashley J., Newman, Stephen J., Wakefield, Corey B., and Bowen, Brian (2020) Range-wide population structure of 3 deepwater eteline snappers across the Indo-Pacific Basin. Journal of Heredity, 111 (5). pp. 471-485.

Araujo, Gonzalo, Legaspi, Christine, Matthews, Kinsey, Ponzo, Alessandro, Chin, Andrew, and Manjaji-Matsumoto, B. Mabel (2020) Citizen science sheds light on the cryptic ornate eagle ray Aetomylaeus vespertilio. Aquatic Conservation, 30 (10). pp. 2012-2018.

Babacan, Hurriyet, and McHugh, Jennifer (2020) RE-thinking agricultural supply chains in Northern Australia. Australasian Journal of Regional Studies, 26 (3). pp. 239-268.

Bayraktarov, Elisa, Brisbane, Shantala, Hagger, Valerie, Smith, Carter S., Wilson, Kerrie A., Lovelock, Catherine E., Gillies, Chris, Steven, Andrew D.L., and Saunders, Megan I. (2020) Priorities and motivations of marine coastal restoration research. Frontiers in Marine Science, 7. 484.

Birkmanis, Charlotte A., Partridge, Julian C., Simmons, Leigh W., Heupel, Michelle R., and Sequeira, Ana M.M. (2020) Shark conservation hindered by lack of habitat protection. Global Ecology and Conservation, 21. e00862.

Bishop, M.J., Murray, N.J., Swearer, S., and Keith, D.A. (2020) MT1.2 Muddy shorelines [In: IUCN Global Ecosystem Typology 2.0: descriptive profiles for biomes and ecosystem functional groups]. Report Section. International Union for Conservation of Nature and Natural Resources, Gland, Switzerland.

Bourillon, Bastien, Acou, Anthony, Trancart, Thomas, Belpaire, Claude, Covaci, Adrian, Bustamante, Paco, Faliex, Elisabeth, Amilhat, Elsa, Malarvannan, Govindan, Virag, Laure, Aarestrup, Kim, Bervoets, Lieven, Boisneau, Catherine, Boulenger, Clarisse, Gargan, Paddy, Becerra-Jurado, Gustavo, Lobon-Cervia, Javier, Maes, Gregory E., Pedersen, Michael Ingemann, Poole, Russell, Sjoberg, Niklas, Wickstrom, Hakan, Walker, Alan, Righton, David, and Feunteun, Eric (2020) Assessment of the quality of European silver eels and tentative approach to trace the origin of contaminants - a European overview. Science of the Total Environment, 743. 140675.

Brazenor, Alexander K., Francis, David S., Conlan, Jessica A., Carton, Alexander G., and Hutson, Kate S. (2020) Temperature alters reproduction and maternal provisioning in a fish ectoparasite. International Journal for Parasitology, 50 (10-11). pp. 839-849.

Brodie, G., Brodie, J., Maata, M., Peter, M., Otiawa, T., and Devlin, M.J. (2020) Seagrass habitat in Tarawa Lagoon, Kiribati: service benefits and links to national priority issues. Marine Pollution Bulletin, 155. 111099.

Budd, Alyssa (2020) Epigenetic effects of temperature on sex change in barramundi, Lates calcarifer. PhD thesis, James Cook University.

Campbell, Matthew J., Tonks, Mark L., Miller, Margaret, Brewer, David T., Courtney, Anthony J., and Simpfendorfer, Colin A. (2020) Factors affecting elasmobranch escape from turtle excluder devices (TEDs) in a tropical penaeid-trawl fishery. Fisheries Research, 224. 105456.

Candebat, Caroline L., Booth, Mark, Williamson, Jane E., and Pirozzi, Igor (2020) The critical oxygen threshold of Yellowtail Kingfish (Seriola lalandi). Aquaculture, 516. 734519.

Candebat, Caroline Lourdes, Booth, Mark, Codabaccus, Mohamed Basseer, and Pirozzi, Igor (2020) Dietary methionine spares the requirement for taurine in juvenile Yellowtail Kingfish (Seriola lalandi). Aquaculture, 522. 735090.

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Dam, Chinh Thi My, Booth, Mark, Pirozzi, Igor, Salini, Michael, Smullen, Richard, Ventura, Tomer, and Elizur, Abigail (2020) Alternative feed raw materials modulate intestinal microbiota and its relationship with digestibility in Yellowtail Kingfish Seriola lalandi. Fishes, 5 (2). 14.

Dam, Chinh Thi My, Ventura, Tomer, Booth, Mark, Pirozzi, Igor, Salini, Michael, Smullen, Richard, and Elizur, Abigail (2020) Intestinal transcriptome analysis highlights key differentially expressed genes involved in nutrient metabolism and digestion in yellowtail kingfish (Seriola lalandi) fed terrestrial animal and plant proteins. Genes, 11 (6). 621.

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Devlin, Michelle, Smith, Andy, Graves, Carolyn A., Petus, Caroline, Tracey, Dieter, Maniel, Michael, Hooper, Eryn, Kotra, Kryshna, Samie, Erie, Loubser, David, and Lyons, Brett P. (2020) Baseline assessment of coastal water quality, in Vanuatu, South Pacific: insights gained from in-situ sampling. Marine Pollution Bulletin, 160. 111651.

Edgar, Graham J., Cooper, Antonia, Baker, Susan C., Barker, William, Barrett, Neville S., Becerro, Mikel A., Bates, Amanda E., Brock, Danny, Ceccarelli, Daniela M., Clausius, Ella, Davey, Marlene, Davis, Tom R., Day, Paul B., Green, Andrew, Griffiths, Samuel R., Hicks, Jamie, Hinojosa, Iván A., Jones, Ben K., Kininmonth, Stuart, Larkin, Meryl F., Lazzari, Natali, Lefcheck, Jonathan S., Ling, Scott D., Mooney, Peter, Oh, Elizabeth, Pérez-Matus, Alejandro, Pocklington, Jacqueline B., Riera, Rodrigo, Sanabria-Fernandez, Jose A., Seroussi, Yanir, Shaw, Ian, Shields, Derek, Shields, Joe, Smith, Margo, Soler, German A., Stuart-Smith, Jemina, Turnbull, John, and Stuart-Smith, Rick D. (2020) Establishing the ecological basis for conservation of shallow marine life using Reef Life Survey. Biological Conservation, 252. 108855.

Foyle, Kevin L., Hess, Sybille, Powell, Mark D., and Herbert, Neill A. (2020) What is gill health and what is its role in marine finfish aquaculture in the face of a changing climate? Frontiers in Marine Science, 7. 400.

Georgeson, L., Rigby, C. L., Emery, T. J., Fuller, M., Hartog, J., Williams, A. J., Hobday, A. J., Duffy, C. A. J., Simpfendorfer, C. A., Okuda, T., Stobutzki, I. C., and Nicol, S. J. (2020) Ecological risks of demersal fishing on deepwater chondrichthyan populations in the Southern Indian and South Pacific Oceans. ICES Journal of Marine Science, 77 (5). pp. 1711-1727.

Grantham, Ruby, Lau, Jacqueline, and Kleiber, Danika (2020) Gleaning: beyond the subsistence narrative. Maritime Studies, 19. pp. 509-524.

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Hair, Catherine Ann (2020) Development of community-based mariculture of sandfish, Holothuria scabra, in New Ireland Province, Papua New Guinea. PhD thesis, James Cook University.

Healy, Teleah Joy, Hill, Nicholas James, Barnett, Adam, and Chin, Andrew (2020) A global review of elasmobranch tourism activities, management and risk. Marine Policy, 118. 103964.

Hoai, Truong Dinh (2020) Reproductive strategies of parasitic flatworms (Platyhelminthes, Monogenea): the impact on parasite management in aquaculture. Aquaculture International, 28 (1). pp. 421-447.

Huerlimann, Roger, Maes, Gregory E., Maxwell, Michael J., Mobli, Mehdi, Launikonis, Bradley S., Jerry, Dean R., and Wade, Nicholas M. (2020) Multi-species transcriptomics reveals evolutionary diversity in the mechanisms regulating shrimp tail muscle excitation-contraction coupling. Gene, 752. 144765.

Hughes, A.T., Hamilton, R.J., Choat, J.H., and Rhodes, K.L. (2020) Declining grouper spawning aggregations in Western Province, Solomon Islands, signal the need for a modified management approach. PLoS ONE, 15 (3). e0230485.

Illing, B., Downie, A.T., Beghin, M., and Rummer, J.L. (2020) Critical thermal maxima of early life stages of three tropical fishes: effects of rearing temperature and experimental heating rate. Journal of Thermal Biology, 90. 102582.

Johnson, Johanna E., Allain, Valerie, Basel, Britt, Bell, Johann D., Chin, Andrew, Dutra, Leo X. C., Hooper, Eryn, Loubser, David, Lough, Janice, Moore, Bradley R., and Nicol, Simon (2020) Impacts of climate change on marine resources in the Pacific Island region. In: Kumar, Lalit, (ed.) Climate Change and Impacts in the Pacific. Springer Climate . Springer, Cham, Switzerland, pp. 359-402.

Jones, Clive (2020) Research for development of lobster growout technology in Indonesia [Final report on ACIAR project FIS/2014/059]. Report. Australian Centre for International Agricultural Research, Canberra, ACT, Australia.

Jones, David B., Nguyen, Huu, Khatkar, Mehar, Simma, David, Jerry, Dean, Raadsma, Herman, Van Der Steen, Hein, Prochaska, Jeffrey, and Zenger, Kyall (2020) The identification of a major sex QTL in the white-leg shrimp, Litopenaeus vannamei. Aquaculture, 529. 735673.

Kalidin, Bhavnah Komul, Mattone, Carlo, and Sheaves, Marcus (2020) Barriers to effective monitoring and evaluation of small-scale fisheries in small island developing states: an example from Mauritius. Marine Policy, 118. 103845.

Karnad, Divya, Sutaria, Dipani, and Jabado, Rima W. (2020) Local drivers of declining shark fisheries in India. Ambio, 49 (2). pp. 616-627.

Kinley, Robert D., Martinez-Fernandez, Gonzalo, Matthews, Melissa K., de Nys, Rocky, Magnusson, Marie, and Tomkins, Nigel W. (2020) Mitigating the carbon footprint and improving productivity of ruminant livestock agriculture using a red seaweed. Journal of Cleaner Production, 259.

Langston, James Douglas, Riggs, Rebecca Anne, Boedhihartono, Agni Klintuni, Kastanya, Agustinus, and Sayer, Jeffrey (2020) An island in transition: governing conservation and development in Seram, Indonesia. Singapore Journal of Tropical Geography, 41 (3). pp. 413-431.

Lau, Sally C.Y., Thomas, Marine, Hancock, Boze, and Russell, Bayden D. (2020) Restoration potential of Asian oysters on heavily developed coastlines. Restoration Ecology, 28 (6). pp. 1643-1653.

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MacNeil, M. Aaron, Chapman, Demian D., Heupel, Michelle, Simpfendorfer, Colin A., Heithaus, Michael, Meekan, Mark, Harvey, Euan, Goetze, Jordan, Kiszka, Jeremy, Bond, Mark E., Currey-Randall, Leanne M., Speed, Conrad W., Sherman, C. Samantha, Rees, Matthew J., Udyawer, Vinay, Flowers, Kathryn I., Clementi, Gina, Valentin-Albanese, Jasmine, Gorham, Taylor, Adam, M. Shiham, Ali, Khadeeja, Pina-Amargós, Fabián, Angulo-Valdés, Jorge A., Asher, Jacob, Barcia, Laura García, Beaufort, Océane, Benjamin, Cecilie, Bernard, Anthony T.F, Berumen, Michael L., Bierwagen, Stacy, Bonnema, Erika, Bown, Rosalind M.K., Bradley, Darcy, Brooks, Edd, Brown, J. Jed, Buddo, Dayne, Burke, Patrick, Cáceres, Camila, Cardeñosa, Diego, Carrier, Jeffrey C., Caselle, Jennifer E., Charloo, Venkatesh, Claverie, Thomas, Clua, Eric, Cochran, Jesse E.M., Cook, Neil, Cramp, Jessica, D'Alberto, Brooke, de Graaf, Martin, Dornhege, Mareike, Estep, Andy, Fanovich, Lanya, Farabough, Naomi F., Fernando, Daniel, Flam, Anna L., Floros, Camilla, Fourqurean, Virginia, Garla, Ricardo, Gastrich, Kirk, George, Lachlan, Graham, Rory, Guttridge, Tristan, Hardenstine, Royale S., Heck, Stephen, Henderson, Aaron C., Hertler, Heidi, Hueter, Robert, Johnson, Mohini, Jupiter, Stacy, Kasana, Devanshi, Kessel, Steven T., Kiilu, Benedict, Kirata, Taratu, Kuguru, Baraka, Kyne, Fabian, Langlois, Tim, Lédée, Elodie J.I., Lindfield, Steve, Luna-Acosta, Andrea, Maggs, Jade, Manjaji-Matsumoto, B. Mabel, Marshall, Andrea, Matich, Philip, McCombs, Erin, McLean, Dianne, Meggs, Llewelyn, Moore, Stephen, Mukherji, Sushmita, Murray, Ryan, Kaimuddin, Muslimin, Newman, Stephen J., Nogués, Josep, Obota, Clay, O'Shea, Owen, Osuka, Kennedy, Papastamatiou, Yannis P., Perera, Nishan, Peterson, Bradley, Ponzo, Alessandro, Prasetyo, Andhika, Quamar, L.M. Sjamsul, Quinlan, Jessica, Ruiz-Abierno, Alexei, Sala, Enric, Samoilys, Melita, Schärer-Umpierre, Michelle, Schlaff, Audrey, Simpson, Nikola, Smith, Adam N.H., Sparks, Lauren, Tanna, Akshay, Torres, Rubén, Travers, Michael J., van Zinnicq Bergmann, Maurits, Vigliola, Laurent, Ward, Juney, Watts, Alexandra M., Wen, Colin, Whitman, Elizabeth, Wirsing, Aaron J., Wothke, Aljoscha, Zarza-Gonzâlez, Esteban, and Cinner, Joshua E. (2020) Global status and conservation potential of reef sharks. Nature, 583. pp. 801-803.

Maire, Eva, D'agata, Stephanie, Aliaume, Catherine, Mouillot, David, Darling, Emily S., Ramahery, Volanirina, Ranaivoson, Ravaka, Randriamanantsoa, Bemahafaly, Tianarisoa, Tantely F., Santisy, Abdoul, and Cinner, Joshua (2020) Disentangling the complex roles of markets on coral reefs in northwest Madagascar. Ecology and Society, 25 (3). 23.

McMahon, Shannon, Parsons, Darren M., Donelson, Jennifer, Pether, Steve M. J., and Munday, Philip L. (2020) Elevated temperature and CO₂ have positive effects on the growth and survival of larval Australasian snapper. Marine Environmental Research, 161. 105054.

Mizrahi, Me'ira, Duce, Stephanie, Khine, Zin Lin, MacKeracher, Tracy, Maung, Khin May Chit, Phyu, Ei Thal, Pressey, Robert L., Simpfendorfer, Colin, and Diedrich, Amy (2020) Mitigating negative livelihood impacts of no-take MPAs on small-scale fishers. Biological Conservation, 245. 108554.

Moore, Bradley R., Adams, Tim, Allain, Valerie, Bell, Johann D., Bigler, Mark, Bromhead, Don, Clark, Sangaa, Davies, Campbell, Evans, Karen, Faasili, Ueta, Farley, Jessica, Fitchett, Mark, Grewe, Peter M., Hampton, John, Hyde, John, Leroy, Bruno, Lewis, Antony, Lorrain, Anne, Macdonald, Jed, Marie, Amandine D., Minte-Vera, Carolina, Natasha, Janice, Nicol, Simon, Obregon, Pablo, Peatman, Thomas, Pecoraro, Carlo, Phillip, N. Bradley, Pilling, Graham M., Rico, Ciro, Sanchez, Caroline, Scott, Robert, Phillips, Joe Scutt, Stockwell, Brian, Tremblay-Boyer, Laura, Usu, Thomas, Williams, Ashley J., and Smith, Neville (2020) Defining the stock structures of key commercial tunas in the Pacific Ocean II: sampling considerations and future directions. Fisheries Research, 230. 105524.

Moore, Bradley R., Bell, Johann D., Evans, Karen, Farley, Jessica, Grewe, Peter M., Hampton, John, Marie, Amandine D., Minte-Vera, Carolina, Nicol, Simon, Pilling, Graham M., Phillips, Joe Scutt, Tremblay-Boyer, Laura, Williams, Ashley J., and Smith, Neville (2020) Defining the stock structures of key commercial tunas in the Pacific Ocean I: current knowledge and main uncertainties. Fisheries Research, 230. 105525.

Morais Araujo, Renato (2020) The productivity of coral reef fishes. PhD thesis, James Cook University.

Nayfa, Maria G., Jones, Dave B., Benzie, John A.H., Jerry, Dean R., and Zenger, Kyall R. (2020) Comparing genomic signatures of selection between the Abbassa Strain and eight wild populations of Nile tilapia (Oreochromis niloticus) in Egypt. Frontiers in Genetics, 11. 567969.

Nayfa, Maria G., Jones, David B., Lind, Curtis E., Benzie, John A.H., Jerry, Dean R., and Zenger, Kyall R. (2020) Pipette and paper: combining molecular and genealogical methods to assess a Nile tilapia (Oreochromis niloticus) breeding program. Aquaculture, 523. 735171.

Paez-Rosas, Diego, Pazmino, Diana A., and Riofrio-Lazo, Marjorie (2020) Unprecedented records of Guadalupe and Juan Fernandez fur seals in the Galapagos Archipelago. Aquatic Mammals, 46 (6). pp. 549-555.

Priyambodo, Bayu, Jones, Clive M., and Sammut, Jesmond (2020) Assessment of the lobster puerulus (Panulirus homarus and Panulirus ornatus, Decapoda: Palinuridae) resource of Indonesia and its potential for sustainable harvest for aquaculture. Aquaculture, 528. 735563.

Randall, Carly J., Negri, Andrew P., Quigley, Kate M., Foster, Taryn, Ricardo, Gerard F., Webster, Nicole S., Bay, Line K., Harrison, Peter L., Babcock, Russ C., and Heyward, Andrew J. (2020) Sexual production of corals for reef restoration in the Anthropocene. Marine Ecology Progress Series, 635. pp. 203-232.

Rodrigues Filho, Luis Fernando da Silva, Feitosa, Leonardo Manir, Silva Nunes, Jorge Luiz, Onodera Palmeira, Ana Rita, Martins, Ana Paula Barbosa, Giarrizzo, Tommaso, Carvalho-Costa, Luís Fernando, Monteiro, Iann Leonardo Pinheiro, Gemaque, Romário, Gomes, Fernanda, Souza, Rosália Furtado C., Sampaio, Iracilda, and Sales, João Bráullio de Luna (2020) Molecular identification of ray species traded along the Brazilian Amazon coast. Fisheries Research, 223. 105407.

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Ruethers, Thimo, Taki, Aya C., Khangurha, Jasmit, Roberts, James, Buddhadasa, Saman, Clarke, Dean, Hedges, Claire E., Campbell, Dianne E., Kamath, Sandip D., Lopata, Andreas L., and Koeberl, Martina (2020) Commercial fish ELISA kits have a limited capacity to detect different fish species and their products. Journal of the Science of Food and Agriculture, 100 (12). pp. 4353-4363.

Saleh, Alzayat (2020) Developing deep learning methods for aquaculture applications. Masters (Research) thesis, James Cook University.

Sambrook, Katie, Bonin, Mary C., Bradley, Michael, Cumming, Graeme S., Duce, Stephanie, Andrefouet, Serge, and Hoey, Andrew S. (2020) Broadening our horizons: seascape use by coral reef-associated fishes in Kavieng, Papua New Guinea, is common and diverse. Coral Reefs, 39. pp. 1187-1197.

Saunders, Megan I., Doropoulos, Christopher, Bayraktarov, Elisa, Babcock, Russell C., Gorman, Daniel, Eger, Aaron M., Vozzo, Maria L., Gillies, Chris L., Vanderklift, Mathew A., Steven, Andy D.L., Bustamante, Rodrigo H., and Silliman, Brian R. (2020) Bright spots in coastal marine ecosystem restoration. Current Biology, 30 (24). R1500-R1510.

Savage, Amy, McIver, Lachlan, and Schubert, Lisa (2020) Review: the nexus of climate change, food and nutrition security and diet-related non-communicable diseases in Pacific Island Countries and Territories. Climate and Development Journal, 12 (2). pp. 120-133.

Schlaff, Audrey M. (2020) Multi-scale patterns in movement and space use of sharks on inshore reefs. PhD thesis, James Cook University.

Scott, Abigail Lucy (2020) The role of herbivores as ecosystem engineers in Great Barrier Reef seagrass meadows. PhD thesis, James Cook University.

Sherman, C. Samantha, Heupel, Michelle R., Johnson, Mohini, Kaimuddin, Muslimin, Qamar, L. M. Sjamsul, Chin, Andrew, and Simpfendorfer, Colin A. (2020) Repeatability of baited remote underwater video station (BRUVS) results within and between seasons. PLoS ONE, 15 (12). e0244154.

Sherman, C. Samantha, Heupel, Michelle R., Moore, Stephen K., Chin, Andrew, and Simpfendorfer, Colin A. (2020) When sharks are away, rays will play: effects of top predator removal in coral reef ecosystems. Marine Ecology - Progress Series, 641. pp. 145-157.

Skilton, Dylan C., Saunders, Richard J., and Hutson, Kate S. (2020) Parasite attractants: identifying trap baits for parasite management in aquaculture. Aquaculture, 516. 734557.

Smallhorn-West, Patrick (2020) Assessing the impact of coral reef community management in the Kingdom of Tonga. PhD thesis, James Cook University.

Smallhorn-West, Patrick F., Sheehan, Jason, Malimali, Siola'a, Halafihi, Tuikolongahau, Bridge, Tom C.L., Pressey, Robert L., and Jones, Geoffrey P. (2020) Incentivizing co-management for impact: mechanisms driving the successful national expansion of Tonga's Special Management Area program. Conservation Letters, 13 (6). e12742.

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Song, Andrew M., Scholtens, Joeri, Barclay, Kate, Bush, Simon R., Fabinyi, Michael, Adhuri, Dedi S., and Haughton, Milton (2020) Collateral damage? Small-scale fisheries in the global fight against IUU fishing. Fish and Fisheries, 21 (4). pp. 831-843.

Spijkers, Jessica (2020) Global patterns of international fisheries conflict. PhD thesis, Stockholm University and James Cook University.

Steinberg, Rosemary K., van der Meer, Martin H., Pratchett, Morgan S., van Herwerden, Lynne, and Hobbs, Jean-Paul A. (2020) Keep your friends close and your anemones closer - ecology of the endemic wideband anemonefish, Amphiprion latezonatus. Environmental Biology of Fishes, 103. pp. 1513-1526.

Tol, Samantha (2020) Relative importance of different seagrass re-establishment strategies in tropical Queensland, Australia. PhD thesis, James Cook University.

Tulloch, Vivitskaia, Pirotta, Vanessa, Grech, Alana, Crocetti, Susan, Double, Michael, How, Jason, Kemper, Catherine, Meager, Justin, Palmer, Carol, Peddemors, Victor, Waples, Kelly, Watson, Mandy, and Harcourt, Robert (2020) Long-term trends and a risk analysis of cetacean entanglements and bycatch in fisheries gear in Australian waters. Biodiversity and Conservation, 29. pp. 251-282.

Vij, Shubha, Purushothanman, Kathiresan, Sridatta, Prakki Sai Rama, and Jerry, Dean R. (2020) Transcriptomic analysis of gill and kidney from Asian seabass (Lates calcarifer) acclimated to different salinities reveals pathways involved with euryhalinity. Genes, 11 (7). 733.

Wakefield, Corey B., Williams, Ashley J., Fisher, Emily A., Hall, Norman G., Hesp, Sybrand A., Halafihi, Tuikolongahau, Kaltavara, Jeremie, Vourey, Elodie, Taylor, Brett M., O'malley, Joseph M., Nicol, Simon J., Wise, Brent S., and Newman, Stephen J. (2020) Variations in life history characteristics of the deep-water giant ruby snapper (Etelis sp.) between the Indian and Pacific Oceans and application of a data-poor assessment. Fisheries Research, 230. 105651.

Whalan, Mathew A., Whippo, Ross D.B., Stachowicz, John J., York, Paul H., Aiello, Erin, Alcoverro, Teresa, Altieri, Andrew H., Bertolini, Camilla, Benedetti-Cecchi, Lisandro, Bresch, Midoli, Bulleri, Fabio, Carnell, Paul E., Cimon, Stéphanie, Connolly, Rod M., Cusson, Mathieu, Diskin, Meredith S., D'Souza, Elrika, Flores, Augusto A.V., Fodrie, F. Joel, Galloway, Aaron W.E., Gaskins, Leo C., Graham, Olivia J., Hanley, Torrance C., Henderson, Christopher J., Hereu, Clara M., Hessing-Lewis, Margot, Hovel, Kevin A., Hughes, Brent B., Hughes, A. Randall, Hultgren, Kristin M., Jänes, Holger, Janiak, Dean S., Johnston, Lane N., Jorgensen, Pablo, Kelaher, Brendan P., Kruschel, Claudia, Lanham, Brendan S., Lee, Kun-Seop, Lefcheck, Jonathan S., Lozano-Álvarez, Enrique, Macreadie, Peter I., Monteith, Zachary L., O'Connor, Nessa E., Olds, Andrew D., O'Leary, Jennifer K., Patrick, Christopher J., Pino, Oscar, Poore, Alistair G.B., Rasheed, Michael A., Raymond, Wendel W., Reiss, Katrin, Rhoades, O. Kennedy, Robinson, Max T., Ross, Paige G., Rossi, Francesca, Schlacher, Thomas A., Seemann, Janina, Silliman, Brian R., Smee, Delbert L., Thiel, Martin, Unsworth, Richard K.F., van Tussenbroek, Brigitta I., Vergés, Adriana, Yeager, Mallarie E., Yednock, Bree K., Ziegler, Shelby L., and Duffy, J. Emmett (2020) Climate drives the geography of marine consumption by changing predator communities. Proceedings of the National Academy of Sciences of the United States of America, 117 (45). pp. 28160-28166.

Winter, Sara Tabea, Fahmi, , Rudianto, Didik, Laglbauer, Betty J.L., Ender, Isabel, and Simpfendorfer, Colin A. (2020) Immature individuals dominate elasmobranch fisheries of the Bali Strait. Marine and Freshwater Research, 71 (11). pp. 1488-1500.

Winther, Jan Gunnar, Dai, Minhan, Rist, Therese, Hoel, Alf Håkon, Li, Yangfan, Trice, Amy, Morrissey, Karyn, Juinio-Meñez, Marie Antonette, Fernandes, Leanne, Unger, Sebastian, Scarano, Fabio Rubio, Halpin, Patrick, and Whitehouse, Sandra (2020) Integrated ocean management for a sustainable ocean economy. Nature Ecology and Evolution, 4 (11). pp. 1451-1458.

Wolfe, Kennedy, Anthony, Ken, Babcock, Russell C., Bay, Line, Bourne, David G., Burrows, Damien, Byrne, Maria, Deaker, Dione, Diaz-Pulido, Guillermo, Frade, Pedro, Gonzalez-Rivero, Manuel, Hoey, Andrew, Hoogenboom, Mia, McCormick, Mark, Ortiz, Juan Carlos, Razak, Tries, Richardson, Anthony J., Roff, George, Sheppard-Brennand, Hannah, Stella, Jessica, Thompson, Angus, Watson, Sue-Ann, Webster, Nicole, Audas, Donna, Beeden, Roger, Carver, Jesseca, Cowlishaw, Mel, Dyer, Michelle, Groves, Paul, Horne, Dylan, Thiault, Lauric, Vains, Jason, Wachenfeld, David, Weekers, Damien, Williams, Genevieve, and Mumby, Peter J. (2020) Priority species to support the functional integrity of coral reefs. Oceanography and Marine Biology: an annual review, 58. pp. 179-318.

Worthington, Thomas A., zu Ermgassen, Philine S.E., Friess, Daniel A., Krauss, Ken W., Lovelock, Catherine E., Thorley, Julia, Tingey, Rick, Woodroffe, Colin D., Bunting, Pete, Cormier, Nicole, Lagomasino, David, Lucas, Richard, Murray, Nicholas J., Sutherland, William J., and Spalding, Mark (2020) A global biophysical typology of mangroves and its relevance for ecosystem structure and deforestation. Scientific Reports, 10 (1). 14652.

Aibinu I, Smooker P and Lopata A (2019) Anisakis nematodes in fish and shellfish- from infection to allergies. International Journal for Parasitology: Parasites and Wildlife, 9. pp. 384-393

Baker R, Barnett A, Bradley M, Abrantes K and Sheaves M (2019) Contrasting seascape use by a coastal fish assemblage: a multi-method approach. Estuaries and Coasts, 42 (1). pp. 292-307

Barrios-Garrido H, Wildermann N, Diedrich A and Hamann M (2019) Conflicts and solutions related to marine turtle conservation initiatives in the Caribbean basin: identifying new challenges. Ocean and Coastal Management, 171. pp. 19-27

Caruana N, Strugnell J, Faou P, Finn J and Cooke I (2019) Comparative proteomic analysis of slime from the striped pyjama squid, Sepioloidea lineolata, and the southern bottletail squid, Sepiadarium austrinum (Cephalopoda: Sepiadariidae). Journal of Proteome Research, 18 (3). pp. 890-899

Dale P, Sporne I, Knight J, Sheaves M, Eslami-Andergoli L and Dwyer P (2019) A conceptual model to improve links between science, policy and practice in coastal management. Marine Policy, 103. pp. 42-49

Diedrich A, Benham C, Pandihau L and Sheaves M (2019) Social capital plays a central role in transitions to sportfishing tourism in small-scale fishing communities in Papua New Guinea.Ambio, 48 (4). pp. 385-396

Diedrich A, Blythe J, Petersen E, Euriga E, Fatchiya A, Shimada T and Jones C (2019) Socio-economic drivers of adoption of small-scale aquaculture in Indonesia. Sustainability, 11 (6).

Dubuc A, Waltham N, Baker R, Marchand C and Sheaves M (2019) Patterns of fish utilisation in a tropical IndoPacific mangrove-coral seascape, New Caledonia. PLoS ONE, 14 (4).

George L, Martins A, Heupel M and Simpfendorfer C (2019) Fine-scale movements of juvenile blacktip reef sharks Carcharhinus melanopterus in a shallow nearshore nursery. Marine Ecology Progress Series, 623. pp. 85-97

Glasson C, Donnet L, Angell A, Vucko M, Lorbeer A, Vamvounis G, de Nys R and Magnusson M (2019) Multiple response optimisation of the aqueous extraction of high quality ulvan from Ulva ohnoi. Bioresource Technology Reports, 7.

Gomes G, Hutson K, Domingos J, Infante Villamil S, Huerlimann R, Miller T and Jerry D (2019) Parasitic protozoan interactions with bacterial microbiome in a tropical fish farm. Aquaculture, 502. pp. 196-201

Grant M, Kyne P, Simpfendorfer C, White W and Chin A (2019) Categorising use patterns of non-marine environments by elasmobranchs and a review of their extinction risk. Reviews in Fish Biology and Fisheries, 29 (3). pp. 1-22

Han G, Cartwright S, Ganmanee M, Chan B, Adzis K, Hutchinson N, Wang J, Hui T, Williams G and Dong Y (2019) High thermal stress responses of Echinolittorina snails at their range edge predict population vulnerability to future warming. Science of the Total Environment, 647. pp. 763-771

Heupel M, Munroe S, Ledee E, Chin A and Simpfendorfer C (2019) Interspecific interactions, movement patterns and habitat use in a diverse coastal shark assemblage. Marine Biology, 166 (6).

Hilder P, Battaglene S, Hart N, Collin S and Cobcroft J (2019) Retinal adaptations of southern bluefin tuna larvae: implications for culture. Aquaculture, 507. pp. 222-232

Hua K, Suwendi E and Bureau D (2019) Effect of body weight on lysine utilization efficiency in Nile Tilapia (Oreochromis niloticus). Aquaculture, 505. pp. 47-53

Hua K, Koppe W and Fontanillas R (2019) Effects of dietary protein and lipid levels on growth, body composition and nutrient utilization of Channa striata. Aquaculture, 501. pp. 368-373

Jiang J, Nuez Ortin W, Angell A, Zeng C, de Nys R and Vucko M (2019) Enhancing the colouration of the marine ornamental fish Pseudochromis fridmani using natural and synthetic sources of astaxanthin. Algal Research, 42.

March D, Ariel E, Munns S, Rudd D, Blyde D, Christidis L and Kelaher B (2019) Physiological changes in post-hatchling green turtles (Chelonia mydas) following short-term fasting: implications for release protocols. Conservation Physiology, 7 (1).

Maclaine A, Forzan M, Mashkour N, Scott J and Ariel E (2019) Pathogenesis of Bohle iridovirus (genus Ranavirus) in experimentally infected juvenile eastern water dragons (Intellagama lesueurii lesueurii). Veterinary Pathology, 56 (3). pp. 465-475

Magnusson M, Glasson C, Vucko M, Angell A, Neoh T and de Nys R (2019) Enrichment processes for the production of high-protein feed from the green seaweed Ulva ohnoi. Algal Research, 41.

Marchese G, Fitzgibbon Q, Trotter A, Carter C, Jones C and Smith G (2019) The influence of flesh ingredients format and krill meal on growth and feeding behaviour of juvenile tropical spiny lobster Panulirus ornatus. Aquaculture, 499. pp. 128-139

Marshall N, Thiault L, Beeden A, Beeden R, Benham C, Curnock M, Diedrich A, Gurney G, Jones L, Marshall P, Nakamura N and Pert P (2019) Our environmental value orientations influence how we respond to climate change. Frontiers in Psychology, 10.

Mizrahi M, Duce S, Pressey R, Simpfendorfer C, Weeks R and Diedrich A (2019) Global opportunities and challenges for shark large marine protected areas. Biological Conservation, 234. pp. 107-115

Mizrahi M, Diedrich A, Weeks R and Pressey R (2019) A systematic review of the socioeconomic factors that influence how marine protected areas impact on ecosystems and livelihoods. Society and Natural Resources, 32 (1). pp. 4-20

Nowland S, Silva C, Southgate P and Strugnell J (2019) Mitochondrial and nuclear genetic analyses of the tropical black-lip rock oyster (Saccostrea echinata) reveals population subdivision and informs sustainable aquaculture development. BMC Genomics, 20.

Praeger C, Vucko M, de Nys R and Cole A (2019) Maximising the productivity of the attached cultivation of Ulva tepida in land-based systems. Algal Research, 40.

Rodríguez-Moreno M, Zapata F, Ramírez-Calero S, van Herwerden L and Feldheim K (2019) Highly polymorphic microsatellite loci for the Acapulco damselfish, Stegastes acapulcoensis, and cross amplification in three congeneric species. Marine Biodiversity, 49 (1). pp. 481-486

Silva C, Villacorta-Rath C, Woodings L, Murphy N, Green B, Hartmann K, Gardner C, Bell J and Strugnell J (2019) Advancing our understanding of the connectivity, evolution and management of marine lobsters through genetics. Reviews in Fish Biology and Fisheries, 29 (3). pp. 669-687

Thorbjørnsen S, Moland E, Simpfendorfer C, Heupel M, Knutsen H and Olsen E (2019) Potential of a no-take marine reserve to protect home ranges of anadromous brown trout (Salmo trutta). Ecology and Evolution, 9 (1). pp. 417-426

Whitelaw B, Cooke I, Finn J, Zenger K and Strugnell J (2019) The evolution and origin of tetrodotoxin acquisition in the blue-ringed octopus (genus Hapalochlaena). Aquatic Toxicology, 206. pp. 114-122

Book Chapters

Heupel M, Kessel S, Matley J and Simpfendorfer C (2018) Acoustic telemetry. In: Shark Research: emerging technologies and applications for the field and laboratory. Marine Biology Series. CRC Press, Boca Raton, FL, USA, pp. 133-156

Konovalov D, Domingos J, White R and Jerry D (2018) Automatic scaling of fish images. Proceedings of the 2nd International Conference on Advances in Image Processing. In: ICAIP 18: 2nd International Conference on Advances in Image Processing, 16-18 June 2018, Chengdu, China

Chin A and Pecl G (2018) Citizen science in shark and ray research and conservation: strengths, opportunities, considerations and pitfalls. In: Shark Research: emerging technologies and applications for the field and laboratory. Marine Biology Series. CRC Press, Boca Raton, FL, USA, pp. 299-317

Publications

Ahasan M, Waltzek T, Huerlimann R and Ariel E (2018) Comparative analysis of gut bacterial communities of green turtles (Chelonia mydas) pre-hospitalization and post-rehabilitation by high-throughput sequencing of bacterial 16S rRNA gene. Microbiological Research, 207. pp. 91-99

Angell A, de Nys R, Mangott A and Vucko M (2018) The effects of concentration and supplementation time of natural and synthetic sources of astaxanthin on the colouration of the prawn Penaeus monodon. Algal Research, 35. pp. 577-585

Baje L, Smart J, Chin A, White W and Simpfendorfer C (2018) Age, growth and maturity of the Australian sharpnose shark Rhizoprionodon taylori from the Gulf of Papua. PLoS ONE, 13 (10)

Bao C, Yang Y, Zeng C, Huang H and Ye H (2018) Identifying neuropeptide GPCRs in the mud crab, Scylla paramamosain, by combinatorial bioinformatics analysis. General and Comparative Endocrinology, 269. pp. 122-130

Barrios-Garrido H, Palmar J, Wildermann N, Rojas-Cañizales D, Diedrich A and Hamann M(2018) Marine turtle presence in the traditional pharmacopoeia, cosmovision, and beliefs of Wayuú indigenous people. Chelonian Conservation and Biology, 17 (2). pp. 177-186

Benham C and Hussey K (2018) Mainstreaming deliberative principles in Environmental Impact Assessment: current practice and future prospects in the Great Barrier Reef, Australia.Environmental Science and Policy, 89. pp. 176-183

Bierwagen S, Heupel M, Chin A and Simpfendorfer C (2018) Trophodynamics as a tool for understanding coral reef ecosystems. Frontiers in Marine Science, 5.

Bierwagen S, Emslie M, Heupel M, Chin A and Simpfendorfer C (2018) Reef-scale variability in fish and coral assemblages on the central Great Barrier Reef. Marine Biology, 165.

Bonebrake T, Brown C, Bell J, Blanchard J, Chauvenet A, Champion C, Chen I, Clark T, Colwell R, Danielsen F, Dell A, Donelson J, Evengård B, Ferrier S, Frusher S, Garcia R, Griffis R, Hobday A, Jarzyna M, Lee E, Lenoir J, Linnetved H, Martin V, McCormack P, McDonald J, McDonald-Madden E, Mitchell N, Mustonen T, Pandolfi J, Pettorelli N, Possingham H, Pulsifer P, Reynolds M, Scheffers B, Sorte C, Strugnell J, Tuanmu M, Twiname S, Vergés A, Villanueva C, Wapstra E, Wernberg T and Pecl G (2018) Managing consequences of climate-driven species redistribution requires integration of ecology, conservation and social science. Biological Reviews, 93 (1). pp. 284-305

Campbell M, McLennan M, Courtney A and Simpfendorfer C (2018) Post-release survival of two elasmobranchs, the eastern shovelnose ray (Aptychotrema rostrata) and the common stingaree (Trygonoptera testacea), discarded from a prawn trawl fishery in southern Queensland, Australia.Marine and Freshwater Research, 69 (4). pp. 551-561

Caron A, Thomas C, Berry K, Motti C, Ariel E and Brodie J (2018) Validation of an optimised protocol for quantification of microplastics in heterogenous samples: a case study using green turtle chyme. MethodsX, 5. pp. 812-823

Chen Z, Wang G, Zeng C and Wu L (2018) Comparative study on the effects of two diatoms as diets on planktonic calanoid and benthic harpacticoid copepods. Journal of Experimental Zoology, Part A, 329 (3). pp. 140-148

Cole A, Praeger C, Mannering T, de Nys R and Magnusson M (2018) Hot and bright: thermal and light environments for the culture of Oedogonium intermedium and the geographical limits for large-scale cultivation in Australia. Algal Research, 34 (2018). pp. 209-216

Domingos J, Budd A, Banh Q, Goldsbury J, Zenger K and Jerry D (2018) Sex-specific dmrt1 and cyp19a1 methylation and alternative splicing in gonads of the protandrous hermaphrodite barramundi. PLoS ONE, 13 (9).

Egan J, Bloom D, Kuo C, Hammer M, Tongnunui P, Iglésias S, Sheaves M, Grudpan C and Simons A (2018) Phylogenetic analysis of trophic niche evolution reveals a latitudinal herbivory gradient in Clupeoidei (herrings, anchovies, and allies). Molecular Phylogenetics and Evolution, 124. pp. 151-161

Fingerhut L, Strugnell J, Faou P, Labiaga À, Zhang J and Cooke I (2018) Shotgun proteomics analysis of saliva and salivary gland tissue from the common octopus Octopus vulgaris. Journal of Proteome Research, 17 (11). pp. 3866-3876

Genodepa J, Zeng C and Southgate P (2018) Changes in digestive enzyme activities and nutrient utilization during embryonic development and starvation of newly hatched larvae of the mud crab, Scylla serrata. Aquaculture, 493. pp. 137-143

Gillies C, McLeod I, Alleway H, Cook P, Crawford C, Creighton C, Diggles B, Ford J, Hamer P, Heller-Wagner G, Lebrault E, Le Port A, Russell K, Sheaves M and Warnock B (2018) Australian shellfish ecosystems: past distribution, current status and future direction. PLoS ONE, 13 (2).

Grant M, Smart J, White W, Chin A, Baje L and Simpfendorfer C (2018) Life history characteristics of the silky shark Carcharhinus falciformis from the central west Pacific. Marine and Freshwater Research, 69 (4). pp. 562-573

Goetze J, Langlois T, McCarter J, Simpfendorfer C, Hughes A, Tingo Leve J and Jupiter S (2018) Drivers of reef shark abundance and biomass in the Solomon Islands. PLoS ONE, 13 (7).

Gutt J, Isla E, Bertler A, Bodeker G, Bracegirdle T, Cavanagh R, Comiso J, Convey P, Cummings V, De Conto R, De Master D, di Prisco G, d'Ovidio F, Griffiths H, Khan A, Lopez-Martinez J, Murray A, Nielsen U, Ott S, Post A, Ropert-Coudert Y, Saucede T, Scherer R, Schiaparelli S, Scholss I, Smith C, Stefels J, Steven C, Strugnell J, Trimborn S, Verde C, Verleyen E, Wall D, Wilson N and Xavier J (2018) Cross-disciplinarity in the advance of Antarctic ecosystem research. Marine Genomics, 37.

Guppy J, Jones D, Jerry D, Wade N, Raadsma H, Huerlimann R and Zenger K (2018) The state of "omics" research for farmed penaeids: advances in research and impediments to industry utilization. Frontiers in Genetics, 9.

Hall R, Robson S and Ariel E (2018) Colour vision of green turtle (Chelonia mydas) hatchlings: do they still prefer blue under water? PeerJ, 6.

Heupel M, Lédée E and Simpfendorfer C (2018) Telemetry reveals spatial separation of co-occurring reef sharks. Marine Ecology - Progress Series, 589. pp. 179-192

Huerlimann R, Wade N, Gordon L, Montenegro J, Goodall J, McWilliam S, Tinning M, Siemering K, Giardina E, Donovan D, Sellars M, Cowley J, Condon K, Coman G, Khatkar M, Raadsma H, Maes G, Zenger K and Jerry D (2018) De novo assembly, characterization, functional annotation and expression patterns of the black tiger shrimp (Penaeus monodon) transcriptome. Scientific Reports, 8.

Infante Villamil S, Huerlimann R, Morianos C, Sarnyai Z and Maes G (2018) Adverse effect of early life high-fat/high-carbohydrate ('Western') diet on bacterial community in the distal bowel of mice. Nutrition Research, 50. pp. 25-36

Jabado R, Kyne P, Pollom R, Ebert D, Simpfendorfer C, Ralph G, Al Dhaheri S, Akhilesh K, Ali K, Ali M, Al Mamari T, Bineesh K, El Hassan I, Fernando D, Grandcourt E, Khan M, Moore A, Owfi F, Robinson D, Romanov E, Soares A, Spaet J, Tesfamichael D, Valinassab T and Dulvy N (2018) Troubled waters: threats and extinction risk of the sharks, rays and chimaeras of the Arabian Sea and adjacent waters. Fish and Fisheries, 19 (6). pp. 1043-1062

Jones C (2018) Progress and obstacles in establishing rock lobster aquaculture in Indonesia. Bulletin of Marine Science, 94 (3). pp. 1223-1233

Jones K, Jensen M, Burgess G, Leonhardt J, van Herwerden L, Hazel J, Hamann M, Bell I and Ariel E (2018) Closing the gap: mixed stock analysis of three foraging populations of green turtles (Chelonia mydas) on the Great Barrier Reef. PeerJ, 6.

Kelly E, Martin P, Gibson-Kueh S, Morgan D, Ebner B, Donaldson J, Buller N, Crook D, Brooks S, Davis A, Hammer M, Foyle L, Hair S and Lymbery A (2018) First detection of Edwardsiella ictaluri (Proteobacteria: Enterobacteriaceae) in wild Australian catfish. Journal of Fish Diseases, 41 (2). pp. 199-208

Konovalov D, Saleh A, Domingos J, White R and Jerry D (2018) Estimating mass of harvested Asian seabass Lates calcarifer from images. World Journal of Engineering and Technology, 6 (3). pp. 15-23

Lane D, Truong E, Larizza F, Chiew P, de Nys R and van Eyk P (2018) Effect of hydrothermal carbonization on the combustion and gasification behavior of agricultural residues and macroalgae: devolatilization characteristics and char reactivity. Energy & Fuels, 32 (4). pp. 4149-4159

Li X, Norman H, Kinley R, Laurence M, Wilmot M, Bender H, de Nys R and Tomkins N (2018) Asparagopsis taxiformis decreases enteric methane production from sheep. Animal Production Science, 58 (4). pp. 681-688

Litvin S, Weinstein M, Sheaves M and Nagelkerken I (2018) What makes nearshore habitats nurseries for nekton? An emerging view of the nursery role hypothesis. Estuaries and Coasts, 41 (6). pp. 1539-1550

Long X, Wu X, Zhao L, Ye H, Cheng Y and Zeng C (2018) Physiological responses and ovarian development of female Chinese mitten crab Eriocheir sinensis subjected to different salinity conditions. Frontiers in Physiology, 8.

Machado L, Tomkins N, Magnusson M, Midgley D, de Nys R and Rosewarne C (2018) In vitro response of rumen microbiota to the antimethanogenic red acroalga Asparagopsis taxiformis.Microbial Ecology, 75 (3). pp. 811-818

Maclaine A, Mashkour N, Scott J and Ariel E (2018) Susceptibility of eastern water dragons Intellagama lesueurii lesueurii to Bohle iridovirus. Diseases of Aquatic Organisms, 127. pp. 97-105

MacKeracher T, Diedrich A and Simpfendorfer C (2018) Sharks, rays and marine protected areas: a critical evaluation of current perspectives. Fish and Fisheries, 20 (2). pp. 255-267

MacKeracher T, Diedrich A, Gurney G and Marshall N (2018) Who trusts who in the Great Barrier Reef? Exploring trust and communication in natural resource management. Environmental Science & Policy, 88. pp. 24-31

March D, Vinette-Herrin K, Peters A, Ariel E, Blyde D, Hayward D, Christidis L and Kelaher B (2018) Hematologic and biochemical characteristics of stranded green sea turtles. Journal of Veterinary Diagnostic Investigation, 30 (3). pp. 423-429

Martins A, Heupel M, Chin A and Simpfendorfer C (2018) Batoid nurseries: definition, use and importance. Marine Ecology - Progress Series, 595. pp. 253-267

Martins A, Feitosa L, Lessa R, Almeida Z, Heupel M, Silva W, Tchaicka L and Silva Nunes J (2018) Analysis of the supply chain and conservation status of sharks (Elasmobranchii: Superorder Selachimorpha) based on fisher knowledge. PLoS One, 13 (3).

Mashkour N, Maclaine A, Burgess G and Ariel E (2018) Discovery of an Australian Chelonia mydas papillomavirus via green turtle primary cell culture and qPCR. Journal of Virological Methods, 258. pp. 13-23

Mendez D, Foyle L, Cobbold R and Speare R (2018) Survey of rabies vaccination status of Queensland veterinarians and veterinary students. Australian Veterinary Journal, 96 (5). pp. 155-160

Morse P, Huffard C, Meekan M, McCormick M and Zenger K (2018) Mating behaviour and postcopulatory fertilization patterns in the southern blue-ringed octopus, Hapalochlaena maculosa. Animal Behaviour, 136. pp. 41-51

Morse P, Kjeldsen S, Meekan M, McCormick M, Finn J, Huffard C and Zenger K (2018) Genome-wide comparisons reveal a clinal species pattern within a holobenthic octopod - the Australian Southern blue-ringed octopus, Hapalochlaena maculosa (Cephalopoda: Octopodidae). Ecology and Evolution, 8 (4). pp. 2253-2267

Nugraha R, Kamath S, Johnston E, Zenger K, Rolland J, O’Hehir R and Lopata A (2018) Rapid and comprehensive discovery of unreported shellfish allergens using large-scale transcriptomic and proteomic resources. Journal of Allergy and Clinical Immunology, 141 (4). pp. 1501-1504

Noordin N, Zeng C and Southgate P (2018) Progress in diet development for blue swimmer crab, Portunus pelagicus, juveniles: effect of dietary phospholipid on survival, development, growth and resistance to osmotic shock. Aquaculture Nutrition, 24 (6). pp. 1834-1844

Praeger C and de Nys R (2018) A new dimension in algal cultivation – 3D printed structures with a range of buoyancies. Algal Research, 36. pp. 209-216

Praeger C and de Nys R (2018) Improvement of the seeding of filamentous Ulva tepida on free-floating surfaces. Algal Research, 30. pp. 73-78

Reid A and Strugnell J (2018) A new pygmy squid, Idiosepius hallami n. sp (Cephalopoda: Idiosepiidae) from eastern Australia and elevation of the southern endemic 'notoides' clade to a new genus, Xipholeptos n. gen. Zootaxa, 4369 (4). pp. 451-486

Roberts D, Shiels L, Tickle J, de Nys R and Paul N (2018) Bioremediation of aluminium from the waste water of a conventional water treatment plant using the freshwater macroalga Oedogonium. Water, 10 (5)

Rolland J, Varese N, Abramovitch J, Anania J, Nugraha R, Kamath S, Hazard A, Lopata A and O’Hehir R (2018) Effect of heat processing on IgE reactivity and cross-reactivity of Tropomyosin and other allergens of Asia-Pacific mollusc species: identification of novel Sydney rock oyster Tropomyosin Sac g 1. Molecular Nutrition & Food Research, 62 (14).

Ruethers T, Taki A, Johnston E, Nugraha R, Le T, Kalic T, McLean T, Kamath S and Lopata A(2018) Seafood allergy: a comprehensive review of fish and shellfish allergens. Molecular Immunology, 100. pp. 28-57

Ruethers T, Raith M, Sharpe M, Koeberl M, Stephen J, Nugraha R, Le T, Quirce S, Nguyen H, Kamath S, Mehr S, Campbell D, Bridges C, Taki A, Swoboda I and Lopata A (2018) Characterization of Ras k 1 a novel major allergen in Indian mackerel and identification of parvalbumin as the major fish allergen in 33 Asia-Pacific fish species. Clinical & Experimental Allergy, 48 (4). pp. 452-463

Sakuna K, Elliman J and Owens L (2018) Therapeutic trials against pre-existing Chequa iflavirus in redclaw crayfish (Cherax quadricarinatus). Aquaculture, 492. pp. 9-14

Sakuna K, Elliman J, Tzamouzaki A and Owens L (2018) A novel virus (order Bunyavirales) from stressed redclaw crayfish (Cherax quadricarinatus) from farms in northern Australia. Virus Research, 250. pp. 7-12

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