Graduate Research School Available Projects Portable long-read sequencing to diagnose Chronic Kidney Disease
Portable long-read sequencing to diagnose Chronic Kidney Disease
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Title of Project
Portable long-read sequencing to diagnose Chronic Kidney Disease
Advisor/s
A/Prof Ulf Schmitz
College or Research Centre
College of Public Health, Medical & Veterinary Science
Summary of Project
This project addresses the early diagnosis of genetic predispositions for Chronic Kidney Disease (CKD), which poses an increasing burden on the North Queensland population and unequally affects the Indigenous Australian peoples. We will develop a mobile diagnostic pipeline that allows a rapid and cost-efficient screening for genetic CKD predispositions using a targeted long-read sequencing approach.
We will use a computer-aided adaptive sequencing approach (ReadUntil) based on known disease-causing genes. This pilot project will determine the suitability of portable 3rd generation sequencing methods to diagnose CKD in remote communities.
Key Words
bioinformatics; long-read sequencing; genetic testing; chronic kidney disease
Would suit an applicant who
is interested in hereditary disease diagnostic and long-read sequencing data analysis. Some bioinformatics skills (incl. Linux, shell scripting, R programming) would be very helpful.
Updated: 25 Feb 2022